Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PGN41_RS05085 Genome accession   NZ_CP115820
Coordinates   1078200..1079531 (-) Length   443 a.a.
NCBI ID   WP_213628479.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain Q4-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073200..1084531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN41_RS05050 - 1073622..1073966 (-) 345 WP_271105047.1 hypothetical protein -
  PGN41_RS05055 - 1073982..1074524 (-) 543 WP_271105048.1 pilus assembly PilX family protein -
  PGN41_RS05060 - 1074534..1075343 (-) 810 WP_271105049.1 PilW family protein -
  PGN41_RS05065 pilV 1075340..1075915 (-) 576 WP_271105050.1 type IV pilus modification protein PilV -
  PGN41_RS05070 - 1075902..1076420 (-) 519 WP_263152752.1 GspH/FimT family pseudopilin -
  PGN41_RS05075 - 1076535..1077044 (-) 510 WP_271105051.1 GspH/FimT family pseudopilin -
  PGN41_RS05080 thiO 1077090..1078187 (+) 1098 WP_271105052.1 glycine oxidase ThiO -
  PGN41_RS05085 pilR 1078200..1079531 (-) 1332 WP_213628479.1 sigma-54-dependent transcriptional regulator Regulator
  PGN41_RS05090 pilS 1079534..1081126 (-) 1593 WP_244862983.1 sensor histidine kinase Regulator
  PGN41_RS05095 - 1081116..1081352 (-) 237 WP_213628481.1 PP0621 family protein -
  PGN41_RS05100 - 1081532..1082551 (-) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  PGN41_RS05105 rluD 1082700..1083671 (+) 972 WP_397468994.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PGN41_RS05110 pgeF 1083671..1084396 (+) 726 WP_263152755.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49411.63 Da        Isoelectric Point: 5.5835

>NTDB_id=773847 PGN41_RS05085 WP_213628479.1 1078200..1079531(-) (pilR) [Pseudomonas tohonis strain Q4-3]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAAEPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVAAALRLRTSGSGDTPMDNRLLGDSPPMKALRNQIQKLARSQAPVY
ISGESGSGKELVARMIHEQGPRHEDPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKIGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAIRTIGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPQLADVM
LKRLAADSAAASITRDAMEKLKSYRFPGNVRELENMLERAYTLCDNDQIQPEDLRLADAPSPSESGEADLAQVSNLEDYL
EEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=773847 PGN41_RS05085 WP_213628479.1 1078200..1079531(-) (pilR) [Pseudomonas tohonis strain Q4-3]
ATGACCAGACAGAGAGCACTCATCGTCGACGACGAGCCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGATACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGTGAACTCCTCGCCGCCGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCGGACGGCACCGGCCTCGACCTCGTGCAGCACATCCAGCAGCGCCATCCGCAGGTCCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCCGTCAACGCACTGAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGGCTTCGCGAGCTGGTCGCTGCGGCCCTGCGCCTGCGCACCAGCGGCAGCGGCGACACGCCGATGGACAACC
GCCTGCTCGGCGACTCGCCGCCGATGAAGGCGCTGCGCAACCAGATCCAGAAGCTCGCGCGCAGCCAGGCACCCGTCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCCCGCATGATCCACGAGCAGGGCCCGCGCCACGAAGACCCCTT
CGTACCGGTCAACTGCGGCGCCATCCCCTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGATCGGCCTGTTCCAGGCGGCCCATGGCGGCACCCTGTTCCTGGACGAAGTGGCAGACCTGCCC
CTGCCCATGCAGGTGAAACTGCTGCGTGCCATCCAGGAAAAAGCCATTCGCACCATAGGTGGCCAGCAGGAAGTGGTAGT
GGACGTACGCATTCTCAGCGCCACCCACAAGGACCTGGCTGCCGAAGTGGCGGCCGGGCGCTTCCGCCAGGACCTCTATT
ACCGCCTGAACGTCATCGAACTCAGTGTCCCCCCGCTGCGCGAGCGCCGCGAGGACATCCCGCAACTGGCCGATGTGATG
CTCAAGCGCCTGGCTGCGGACAGCGCCGCGGCCAGCATCACCCGCGACGCCATGGAAAAGCTCAAGAGCTATCGCTTCCC
CGGCAACGTCCGCGAGCTGGAAAACATGCTCGAGCGGGCCTACACGCTCTGCGACAACGACCAGATCCAGCCCGAGGACC
TGCGCCTGGCCGACGCGCCCTCGCCGTCGGAAAGCGGCGAGGCCGACCTTGCGCAGGTCAGCAACCTCGAGGACTACCTG
GAAGAGATCGAGCGCAAGCTCATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCCCAGCGCCTGGG
CCTGACCTTCCGCTCGATGCGCTACCGCCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.067

100

0.865
  pilR Acinetobacter baumannii strain A118

49.892

100

0.519
  luxO Vibrio cholerae strain A1552

37.557

99.774

0.375