Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PGN41_RS05090 Genome accession   NZ_CP115820
Coordinates   1079534..1081126 (-) Length   530 a.a.
NCBI ID   WP_244862983.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain Q4-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074534..1086126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN41_RS05060 - 1074534..1075343 (-) 810 WP_271105049.1 PilW family protein -
  PGN41_RS05065 pilV 1075340..1075915 (-) 576 WP_271105050.1 type IV pilus modification protein PilV -
  PGN41_RS05070 - 1075902..1076420 (-) 519 WP_263152752.1 GspH/FimT family pseudopilin -
  PGN41_RS05075 - 1076535..1077044 (-) 510 WP_271105051.1 GspH/FimT family pseudopilin -
  PGN41_RS05080 thiO 1077090..1078187 (+) 1098 WP_271105052.1 glycine oxidase ThiO -
  PGN41_RS05085 pilR 1078200..1079531 (-) 1332 WP_213628479.1 sigma-54-dependent transcriptional regulator Regulator
  PGN41_RS05090 pilS 1079534..1081126 (-) 1593 WP_244862983.1 sensor histidine kinase Regulator
  PGN41_RS05095 - 1081116..1081352 (-) 237 WP_213628481.1 PP0621 family protein -
  PGN41_RS05100 - 1081532..1082551 (-) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  PGN41_RS05105 rluD 1082700..1083671 (+) 972 WP_397468994.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PGN41_RS05110 pgeF 1083671..1084396 (+) 726 WP_263152755.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58963.31 Da        Isoelectric Point: 8.9929

>NTDB_id=773848 PGN41_RS05090 WP_244862983.1 1079534..1081126(-) (pilS) [Pseudomonas tohonis strain Q4-3]
MSGESTVLGGQPARRIFRLYNLYRLIIGLALVGLISSELDSELLDLARAQLFRNASWFYLLLNILIALMVRHPKHMLQVF
SLALVDVILLSCLFYAAGGTPSGIGNLVIVAVAIANILLRGRVGLLIAAVATIGMIYLTFYLSLSRPEVANQYVQAGALG
ALCFAAALFVQGISKRLQLSETLAEKRAADVANLEALNALILQRMRTGILVLDAQHRVLLANQGAQTLLGRDDLAGRIID
PQSPELVKRLQQWMDNPALRPQSLQAMPEGPVLQPSFVPLQRGEQRDTLIFLEDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELTGPDRRLAQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRNASGPG
QTLHIETNSGTIQTRMDPHQLTQVLTNLVQNGLRYSFQKNKVGQVWLRLFRDPESDLPILEIMDDGAGVPPEQVQHIFEP
FYTTESKGTGLGLYISRELCESNQARLDYRPRETGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=773848 PGN41_RS05090 WP_244862983.1 1079534..1081126(-) (pilS) [Pseudomonas tohonis strain Q4-3]
GTGAGCGGTGAGTCGACGGTCCTGGGCGGGCAGCCGGCGCGGCGCATCTTCCGCCTCTACAACCTCTACCGGCTGATCAT
CGGCCTCGCGCTGGTCGGGCTGATCTCCAGCGAGCTGGACAGCGAACTGCTCGACCTCGCCCGCGCGCAGCTGTTCCGCA
ACGCCTCCTGGTTCTACCTGCTGCTGAACATCCTGATCGCCCTGATGGTCCGCCATCCGAAGCACATGCTGCAGGTGTTC
AGCCTGGCACTCGTGGACGTGATCCTGCTGTCCTGCCTGTTCTACGCGGCCGGCGGTACGCCCAGCGGCATCGGCAACCT
GGTGATAGTCGCGGTGGCCATCGCCAACATCCTGCTCCGGGGCCGGGTCGGCCTGCTGATCGCCGCCGTCGCCACCATCG
GCATGATCTACCTGACCTTCTACCTCAGCCTCAGCCGTCCGGAAGTCGCCAACCAGTACGTACAGGCCGGTGCGCTCGGC
GCCCTCTGTTTTGCGGCCGCCCTCTTCGTCCAGGGCATCAGCAAACGCCTGCAACTGAGCGAGACCCTGGCGGAAAAGCG
CGCCGCCGACGTCGCCAACCTCGAGGCTCTCAACGCCCTGATCCTGCAACGGATGCGCACCGGTATCCTGGTGCTCGACG
CGCAACACCGCGTGCTCCTGGCCAACCAGGGCGCCCAGACCCTGCTGGGCCGCGATGACCTCGCCGGGCGCATCATCGAC
CCGCAGAGCCCGGAACTGGTCAAGCGTCTCCAGCAATGGATGGACAACCCCGCCCTGCGCCCGCAGAGCCTGCAGGCCAT
GCCCGAAGGCCCGGTGCTGCAACCCAGCTTCGTACCGCTGCAACGGGGCGAACAACGCGACACCTTGATCTTCCTCGAAG
ACATCTCGCAGATCGCCCAGCAGGCGCAACAGCTCAAGCTCGCCTCCCTCGGCCGCCTGACCGCCGGCATCGCCCATGAG
ATACGCAACCCCCTGGGCGCCATCAGCCATGCCGCGCAGCTGCTGCAGGAGTCGGAAGAGCTGACCGGCCCAGACCGACG
CCTGGCGCAGATCATCCAAGACCAGTCGCGACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTGTCACGCCGTCGCC
AGTCAGAACCCCAGCTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAGTTCCGCAATGCCTCAGGCCCCGGC
CAGACACTGCACATCGAGACCAACAGCGGCACGATCCAGACCCGCATGGACCCGCACCAGTTGACCCAGGTGCTGACCAA
CCTGGTACAGAACGGTCTGCGCTACAGTTTTCAGAAGAACAAGGTCGGACAGGTCTGGCTTCGCCTATTCCGTGATCCGG
AAAGCGACCTGCCCATCCTGGAGATCATGGATGATGGAGCCGGCGTGCCGCCCGAGCAGGTGCAGCACATCTTCGAACCC
TTCTACACGACTGAAAGCAAGGGTACCGGGCTCGGCCTGTACATCTCGCGCGAGCTGTGCGAGAGCAACCAGGCCCGCCT
CGACTACCGCCCACGCGAAACCGGCGGCAGCTGTTTTCGCATTACCTTTGCCCACCCGCGCAAATTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.038

100

0.66