Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PAK23_RS04770 Genome accession   NZ_CP115817
Coordinates   1040968..1042308 (-) Length   446 a.a.
NCBI ID   WP_276488546.1    Uniprot ID   -
Organism   Pseudomonas mendocina strain GD22SC3150TT     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035968..1047308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAK23_RS04740 - 1036798..1037364 (-) 567 WP_143498151.1 PilX N-terminal domain-containing pilus assembly protein -
  PAK23_RS04745 - 1037361..1038077 (-) 717 WP_143498150.1 PilW family protein -
  PAK23_RS04750 pilV 1038080..1038619 (-) 540 WP_276488542.1 type IV pilus modification protein PilV -
  PAK23_RS04755 - 1038616..1039149 (-) 534 WP_276488543.1 GspH/FimT family pseudopilin -
  PAK23_RS04760 - 1039265..1039768 (-) 504 WP_276488544.1 GspH/FimT family pseudopilin -
  PAK23_RS04765 - 1039892..1040956 (+) 1065 WP_276488545.1 FAD-dependent oxidoreductase -
  PAK23_RS04770 pilR 1040968..1042308 (-) 1341 WP_276488546.1 sigma-54 dependent transcriptional regulator Regulator
  PAK23_RS04775 pilS 1042311..1043903 (-) 1593 WP_276489277.1 ATP-binding protein Regulator
  PAK23_RS04780 - 1043893..1044129 (-) 237 WP_276488547.1 PP0621 family protein -
  PAK23_RS04785 - 1044327..1045319 (-) 993 WP_276488548.1 outer membrane protein assembly factor BamD -
  PAK23_RS04790 rluD 1045458..1046432 (+) 975 WP_276488549.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PAK23_RS04795 pgeF 1046429..1047160 (+) 732 WP_276488550.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49889.18 Da        Isoelectric Point: 5.4561

>NTDB_id=773805 PAK23_RS04770 WP_276488546.1 1040968..1042308(-) (pilR) [Pseudomonas mendocina strain GD22SC3150TT]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQYIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRSPEGEETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRAEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEVM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPNDLRLADASCPGNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=773805 PAK23_RS04770 WP_276488546.1 1040968..1042308(-) (pilR) [Pseudomonas mendocina strain GD22SC3150TT]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAGCTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCACGCGAATGGCTGGCGCGCGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGTACCGGCCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCGCAGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGATACCGCGATCAACTCCCTCAAGGCCGGGGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGGCTGCGCGAACTGGTGGCCACCGCCCTGCGCATTCGCTCCCCCGAAGGCGAGGAAACTCCGGTCGACAGCC
GCCTGCTCGGCGATTCCCCGCCGATGAAATCGCTGCGCAAACAGATCCAGAAGCTCTCGCGCAGCCAGGCCCCGGTCTAC
ATCAGCGGTGAATCAGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATCCACGAACAGGGCCCGCGAGCCGAGCAGCCCTT
CGTGCCGGTGAACTGCGGCGCCATCCCCTCTGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GTGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCTGCCAATGGCGGCACCCTGTTTCTCGACGAGGTCGCCGACCTGCCG
CTGCCGATGCAGGTGAAACTGCTGCGGGCGATTCAGGAAAAGGCCGTGCGTGCGGTCGGTGGTCAGCAGGAAGTGGTGGT
CGATGTGCGTATCCTCTGCGCCACCCACAAGGATCTTGCCGCAGAGGTCGCCGCTGGCCGCTTCCGCCAGGATCTCTACT
ATCGCCTTAACGTCATCGAACTACGCGTGCCGCCCCTGCGCGAACGTCGCGAAGACATCGCCCAGCTGGCCGAGGTGATG
CTCGCGCGCCTGGCTGATGGCACCGGCCTTGCGGCAGCCAAGCTGCACCCCGACGCACTGGAAAAACTGAAGAACTATCG
CTTCCCGGGCAATGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTATGCGAGGACGATCAGATCACTCCGA
ACGATCTGCGCCTGGCCGACGCCAGCTGTCCCGGTAACGAAGGTGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCACTGGAGGAAACACGCTGGAACCGCACCGCCGCGGCCCA
GCGCCTGGGCCTGACCTTCCGATCAATGCGTTATCGCCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.238

100

0.892
  pilR Acinetobacter baumannii strain A118

49.13

100

0.507
  luxO Vibrio cholerae strain A1552

38.117

100

0.381