Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PAF20_RS09785 Genome accession   NZ_CP115775
Coordinates   1954712..1955212 (+) Length   166 a.a.
NCBI ID   WP_271070478.1    Uniprot ID   -
Organism   Paracoccus albus strain SCSIO 80058     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1949712..1960212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAF20_RS09765 (PAF20_09765) - 1951476..1952042 (-) 567 WP_271070475.1 hypothetical protein -
  PAF20_RS09770 (PAF20_09770) hemB 1952136..1953134 (+) 999 WP_271070476.1 porphobilinogen synthase -
  PAF20_RS09775 (PAF20_09775) - 1953180..1953761 (+) 582 WP_271070477.1 YSC84-related protein -
  PAF20_RS09780 (PAF20_09780) - 1953831..1954403 (-) 573 WP_271073296.1 lytic transglycosylase domain-containing protein -
  PAF20_RS09785 (PAF20_09785) ssb 1954712..1955212 (+) 501 WP_271070478.1 single-stranded DNA-binding protein Machinery gene
  PAF20_RS09790 (PAF20_09790) aroB 1955554..1956654 (-) 1101 WP_271070479.1 3-dehydroquinate synthase -
  PAF20_RS09795 (PAF20_09795) - 1956651..1957187 (-) 537 WP_271070480.1 shikimate kinase -
  PAF20_RS09800 (PAF20_09800) - 1957303..1957539 (+) 237 WP_271070481.1 hypothetical protein -
  PAF20_RS09805 (PAF20_09805) - 1957562..1959139 (+) 1578 WP_271070482.1 hypothetical protein -
  PAF20_RS09810 (PAF20_09810) - 1959136..1960074 (+) 939 WP_271070483.1 tyrosine recombinase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17738.32 Da        Isoelectric Point: 5.3193

>NTDB_id=773713 PAF20_RS09785 WP_271070478.1 1954712..1955212(+) (ssb) [Paracoccus albus strain SCSIO 80058]
MAGSVNKVILIGNLGADPEVRTFQNGGKVVNLRIATSEQWKDRNTGERQERTQWHSVAIFAEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYTTEVVLRPYRSELTMLDGRGEGGGNRSGSGGGYGGGGGYDDGGYGGGSSGGGSQGGGGRADF
DDEIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=773713 PAF20_RS09785 WP_271070478.1 1954712..1955212(+) (ssb) [Paracoccus albus strain SCSIO 80058]
ATGGCAGGCAGCGTCAACAAGGTGATCCTGATCGGCAATCTGGGCGCCGACCCCGAGGTTCGCACGTTCCAGAACGGCGG
CAAGGTGGTGAACCTGCGCATTGCCACCTCGGAGCAGTGGAAGGACCGCAACACCGGCGAGCGGCAGGAGCGTACGCAGT
GGCACTCGGTCGCGATCTTCGCCGAGCCTCTGGCCCGCGTCGCGGAACAATACCTGCGCAAGGGAAGCAAGGTCTATCTG
GAAGGCCAGCTTGAAACCCGCAAATGGCAGGACCAGTCCGGCCAGGACCGCTATACGACAGAGGTCGTCTTGCGTCCCTA
TCGCAGCGAGTTGACCATGCTGGACGGTCGCGGCGAAGGTGGCGGCAACCGCAGTGGTTCCGGCGGCGGTTATGGCGGCG
GCGGCGGATATGATGACGGCGGCTACGGTGGCGGCTCATCCGGCGGCGGCAGTCAGGGCGGCGGCGGTCGTGCGGATTTC
GACGACGAAATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.524
  ssb Vibrio cholerae strain A1552

49.711

100

0.518
  ssb Neisseria meningitidis MC58

40.217

100

0.446
  ssb Neisseria gonorrhoeae MS11

39.674

100

0.44