Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PAF12_RS09935 Genome accession   NZ_CP115757
Coordinates   2052680..2053189 (+) Length   169 a.a.
NCBI ID   WP_271106774.1    Uniprot ID   -
Organism   Paracoccus sp. SCSIO 75233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2047680..2058189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAF12_RS09915 (PAF12_09915) - 2049437..2050009 (-) 573 WP_271106770.1 hypothetical protein -
  PAF12_RS09920 (PAF12_09920) hemB 2050083..2051081 (+) 999 WP_271106771.1 porphobilinogen synthase -
  PAF12_RS09925 (PAF12_09925) - 2051127..2051708 (+) 582 WP_271106772.1 YSC84-related protein -
  PAF12_RS09930 (PAF12_09930) - 2051806..2052456 (-) 651 WP_271106773.1 lytic transglycosylase domain-containing protein -
  PAF12_RS09935 (PAF12_09935) ssb 2052680..2053189 (+) 510 WP_271106774.1 single-stranded DNA-binding protein Machinery gene
  PAF12_RS09940 (PAF12_09940) - 2053276..2053740 (-) 465 WP_271106775.1 iron-sulfur cluster assembly scaffold protein -
  PAF12_RS09945 (PAF12_09945) hisI 2053799..2054158 (+) 360 WP_271106776.1 phosphoribosyl-AMP cyclohydrolase -
  PAF12_RS09950 (PAF12_09950) gluQRS 2054457..2055299 (-) 843 WP_271106777.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  PAF12_RS09955 (PAF12_09955) trmFO 2055281..2056615 (-) 1335 WP_271106778.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PAF12_RS09960 (PAF12_09960) - 2056908..2057366 (-) 459 WP_271106779.1 Hsp20 family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18005.57 Da        Isoelectric Point: 5.3193

>NTDB_id=773700 PAF12_RS09935 WP_271106774.1 2052680..2053189(+) (ssb) [Paracoccus sp. SCSIO 75233]
MAGSVNKVILIGNLGQDPEVRTFQNGGKVVNLRIATSEQWKDRNSGERQERTQWHSVAIFAEPLARVAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRSELTMLDGRGEGGGGGRGGSGGGFGGGSSYGNDGGYGDGPSGGGNQGGGGGR
SDFDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=773700 PAF12_RS09935 WP_271106774.1 2052680..2053189(+) (ssb) [Paracoccus sp. SCSIO 75233]
ATGGCAGGCAGCGTCAACAAGGTGATCCTGATCGGGAATCTGGGTCAGGACCCGGAGGTCCGCACGTTCCAGAACGGGGG
CAAGGTGGTCAACCTGCGCATCGCTACGTCCGAGCAATGGAAGGACCGCAATAGCGGCGAGCGGCAGGAGCGTACCCAGT
GGCATTCCGTCGCGATCTTCGCAGAACCGCTGGCCCGCGTGGCCGAGCAATATCTGCGCAAGGGCAGCAAGGTCTATATC
GAGGGCCAGCTTGAGACCCGCAAATGGCAGGACCAGTCGGGTCAGGACCGCTACTCGACCGAGGTGGTGCTGCGCCCCTA
TCGCAGCGAACTGACCATGCTGGATGGGCGCGGCGAAGGTGGCGGCGGCGGACGTGGTGGCTCCGGCGGCGGATTCGGCG
GCGGCAGCAGCTATGGCAATGATGGCGGCTACGGGGACGGCCCCTCCGGCGGCGGCAATCAGGGCGGCGGCGGCGGTCGT
TCGGATTTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.556

100

0.538
  ssb Glaesserella parasuis strain SC1401

48.387

100

0.533
  ssb Neisseria meningitidis MC58

40.556

100

0.432
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.432