Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | OSK17_RS22310 | Genome accession | NZ_CP115738 |
| Coordinates | 4256750..4257268 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis strain W7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4216489..4256735 | 4256750..4257268 | flank | 15 |
Gene organization within MGE regions
Location: 4216489..4257268
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OSK17_RS22055 (OSK17_22055) | yybO | 4216904..4218214 (+) | 1311 | WP_014478548.1 | MFS transporter | - |
| OSK17_RS22060 (OSK17_22060) | - | 4218374..4219111 (+) | 738 | WP_043940254.1 | MerR family transcriptional regulator | - |
| OSK17_RS22065 (OSK17_22065) | - | 4219149..4219937 (-) | 789 | WP_043940255.1 | hypothetical protein | - |
| OSK17_RS22070 (OSK17_22070) | yybH | 4220005..4220392 (-) | 388 | Protein_4301 | YybH family protein | - |
| OSK17_RS22075 (OSK17_22075) | - | 4220482..4220612 (-) | 131 | Protein_4302 | LysR family transcriptional regulator | - |
| OSK17_RS22080 (OSK17_22080) | yybB | 4220620..4221282 (-) | 663 | WP_032724976.1 | MBL fold metallo-hydrolase | - |
| OSK17_RS22085 (OSK17_22085) | yybA | 4221412..4221864 (-) | 453 | WP_003226875.1 | MarR family transcriptional regulator | - |
| OSK17_RS22090 (OSK17_22090) | yyaT | 4221984..4222424 (+) | 441 | WP_041850273.1 | GNAT family N-acetyltransferase | - |
| OSK17_RS22095 (OSK17_22095) | yyaS | 4222426..4223028 (+) | 603 | WP_043940256.1 | YczE/YyaS/YitT family protein | - |
| OSK17_RS22100 (OSK17_22100) | satA | 4223095..4223616 (-) | 522 | WP_043940257.1 | streptothricin N-acetyltransferase SatA | - |
| OSK17_RS22105 (OSK17_22105) | yyaQ | 4223996..4224352 (+) | 357 | WP_043940258.1 | MmcQ/YjbR family DNA-binding protein | - |
| OSK17_RS22110 (OSK17_22110) | yyaP | 4224512..4225078 (+) | 567 | WP_021481097.1 | dihydrofolate reductase family protein | - |
| OSK17_RS22115 (OSK17_22115) | - | 4225320..4225500 (+) | 181 | Protein_4310 | DUF255 domain-containing protein | - |
| OSK17_RS22120 (OSK17_22120) | - | 4225568..4225987 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| OSK17_RS22125 (OSK17_22125) | acr3 | 4225999..4227039 (-) | 1041 | WP_119900017.1 | arsenite efflux transporter Acr3 | - |
| OSK17_RS22130 (OSK17_22130) | - | 4227061..4227501 (-) | 441 | WP_119900019.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| OSK17_RS22135 (OSK17_22135) | arsR | 4227561..4227878 (-) | 318 | WP_029318103.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| OSK17_RS22140 (OSK17_22140) | - | 4228153..4229661 (+) | 1509 | WP_119900021.1 | recombinase family protein | - |
| OSK17_RS22145 (OSK17_22145) | - | 4229761..4230543 (-) | 783 | WP_119900023.1 | hypothetical protein | - |
| OSK17_RS22150 (OSK17_22150) | - | 4230645..4231028 (-) | 384 | WP_119900025.1 | cystatin-like fold lipoprotein | - |
| OSK17_RS22155 (OSK17_22155) | - | 4231091..4231597 (-) | 507 | WP_119900027.1 | hypothetical protein | - |
| OSK17_RS22160 (OSK17_22160) | cwlT | 4231612..4232601 (-) | 990 | WP_119900029.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| OSK17_RS22165 (OSK17_22165) | conG | 4232598..4235045 (-) | 2448 | WP_119900031.1 | CD3337/EF1877 family mobilome membrane protein | - |
| OSK17_RS22170 (OSK17_22170) | yddF | 4235049..4235375 (-) | 327 | WP_019716380.1 | YddF family protein | - |
| OSK17_RS22175 (OSK17_22175) | conE | 4235393..4237888 (-) | 2496 | WP_119900033.1 | VirB4-like ATPase ConE | - |
| OSK17_RS22180 (OSK17_22180) | conD | 4237776..4238300 (-) | 525 | WP_119900035.1 | conjugal transfer protein | - |
| OSK17_RS22185 (OSK17_22185) | - | 4238313..4238561 (-) | 249 | WP_119900037.1 | hypothetical protein | - |
| OSK17_RS22190 (OSK17_22190) | conB | 4238573..4239637 (-) | 1065 | WP_119900038.1 | conjugal transfer protein | - |
| OSK17_RS22195 (OSK17_22195) | - | 4239655..4239813 (-) | 159 | WP_162920081.1 | hypothetical protein | - |
| OSK17_RS22200 (OSK17_22200) | - | 4239831..4240109 (-) | 279 | WP_044430163.1 | hypothetical protein | - |
| OSK17_RS22205 (OSK17_22205) | - | 4240126..4240392 (-) | 267 | WP_119900040.1 | hypothetical protein | - |
| OSK17_RS22210 (OSK17_22210) | nicK | 4240659..4241717 (-) | 1059 | WP_119900042.1 | DNA relaxase NicK | - |
| OSK17_RS22215 (OSK17_22215) | - | 4241710..4243161 (-) | 1452 | WP_119900044.1 | DNA translocase FtsK | - |
| OSK17_RS22220 (OSK17_22220) | helP | 4243197..4243577 (-) | 381 | WP_119900046.1 | helicase processivity factor HelP | - |
| OSK17_RS22225 (OSK17_22225) | - | 4243594..4243740 (-) | 147 | WP_119900048.1 | hypothetical protein | - |
| OSK17_RS22230 (OSK17_22230) | - | 4243945..4244205 (-) | 261 | WP_119900050.1 | hypothetical protein | - |
| OSK17_RS22235 (OSK17_22235) | - | 4244258..4244482 (-) | 225 | WP_206697900.1 | hypothetical protein | - |
| OSK17_RS22240 (OSK17_22240) | - | 4244515..4244694 (-) | 180 | WP_119900054.1 | ICEBs1 excisionase | - |
| OSK17_RS22245 (OSK17_22245) | - | 4244991..4245374 (+) | 384 | WP_019716391.1 | helix-turn-helix domain-containing protein | - |
| OSK17_RS22250 (OSK17_22250) | - | 4245371..4245901 (+) | 531 | WP_019716392.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OSK17_RS22255 (OSK17_22255) | - | 4246014..4247210 (-) | 1197 | WP_271069397.1 | Rap family tetratricopeptide repeat protein | - |
| OSK17_RS22260 (OSK17_22260) | - | 4247429..4248196 (+) | 768 | WP_119900058.1 | hypothetical protein | - |
| OSK17_RS22265 (OSK17_22265) | - | 4248213..4249037 (+) | 825 | WP_119900060.1 | hypothetical protein | - |
| OSK17_RS22270 (OSK17_22270) | yyaL | 4249042..4251131 (+) | 2090 | Protein_4341 | thioredoxin domain-containing protein | - |
| OSK17_RS22275 (OSK17_22275) | yyaK | 4251128..4252027 (-) | 900 | WP_032724963.1 | CPBP family intramembrane glutamic endopeptidase | - |
| OSK17_RS22280 (OSK17_22280) | yyaJ | 4252254..4253609 (+) | 1356 | WP_041850266.1 | MFS transporter | - |
| OSK17_RS22285 (OSK17_22285) | maa | 4253643..4254197 (-) | 555 | WP_015250785.1 | sugar O-acetyltransferase | - |
| OSK17_RS22290 (OSK17_22290) | yyaH | 4254213..4254593 (-) | 381 | WP_015715075.1 | VOC family protein | - |
| OSK17_RS22295 (OSK17_22295) | ccpB | 4254649..4255584 (-) | 936 | WP_015715076.1 | transcriptional regulator CcpB | - |
| OSK17_RS22300 (OSK17_22300) | xth | 4255644..4256402 (-) | 759 | WP_015250782.1 | exodeoxyribonuclease III | - |
| OSK17_RS22305 (OSK17_22305) | rpsR | 4256467..4256706 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| OSK17_RS22310 (OSK17_22310) | ssbA | 4256750..4257268 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=773695 OSK17_RS22310 WP_003219228.1 4256750..4257268(-) (ssbA) [Bacillus subtilis strain W7]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=773695 OSK17_RS22310 WP_003219228.1 4256750..4257268(-) (ssbA) [Bacillus subtilis strain W7]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |