Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QR290_RS23025 Genome accession   NZ_CP128260
Coordinates   5134833..5135894 (-) Length   353 a.a.
NCBI ID   WP_115078985.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5129833..5140894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS22995 (QR290_22995) pal 5130150..5130647 (-) 498 WP_003178634.1 peptidoglycan-associated lipoprotein Pal -
  QR290_RS23000 (QR290_23000) tolB 5130700..5131980 (-) 1281 WP_166742344.1 Tol-Pal system beta propeller repeat protein TolB -
  QR290_RS23005 (QR290_23005) tolA 5131998..5133077 (-) 1080 WP_011335641.1 cell envelope integrity protein TolA -
  QR290_RS23010 (QR290_23010) tolR 5133077..5133529 (-) 453 WP_162130475.1 protein TolR -
  QR290_RS23015 (QR290_23015) tolQ 5133553..5134248 (-) 696 WP_007912733.1 protein TolQ -
  QR290_RS23020 (QR290_23020) ybgC 5134238..5134705 (-) 468 WP_007951203.1 tol-pal system-associated acyl-CoA thioesterase -
  QR290_RS23025 (QR290_23025) ruvB 5134833..5135894 (-) 1062 WP_115078985.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QR290_RS23030 (QR290_23030) ruvA 5135895..5136503 (-) 609 WP_007951205.1 Holliday junction branch migration protein RuvA -
  QR290_RS23035 (QR290_23035) ruvC 5136618..5137145 (-) 528 WP_115078986.1 crossover junction endodeoxyribonuclease RuvC -
  QR290_RS23040 (QR290_23040) - 5137303..5138049 (-) 747 WP_003227527.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QR290_RS23045 (QR290_23045) aspS 5138174..5139949 (-) 1776 WP_289203684.1 aspartate--tRNA ligase -
  QR290_RS23050 (QR290_23050) - 5140058..5140279 (-) 222 WP_007951210.1 zinc ribbon domain-containing protein -
  QR290_RS23055 (QR290_23055) - 5140393..5140740 (-) 348 WP_289203685.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 39188.92 Da        Isoelectric Point: 5.0663

>NTDB_id=773454 QR290_RS23025 WP_115078985.1 5134833..5135894(-) (ruvB) [Pseudomonas fluorescens strain PH.SM]
MIEADRLIAATHSPREREEVQDRAIRPVSLAEYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQE
MGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLV
GATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSASILGLPLDPEGSFEIARRARGTPRIANRLLRRVRDFAEVRA
KGHITKAVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGR
VVTRHAYLHFGLNIPTRMGEMPVADEFLDAVDD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=773454 QR290_RS23025 WP_115078985.1 5134833..5135894(-) (ruvB) [Pseudomonas fluorescens strain PH.SM]
GTGATTGAAGCTGATCGTCTGATCGCCGCCACGCACAGTCCGCGTGAGCGCGAAGAAGTCCAGGATCGGGCGATACGTCC
CGTCAGCCTGGCCGAATACATCGGCCAGCCGACCGTTCGCGAGCAGATGGAACTGTTTATCCAGGCCGCCCGCGGCCGTA
GCGAATCCCTCGACCACACCCTGATCTTCGGGCCGCCGGGGCTGGGTAAAACCACGCTGGCCAACATCATCGCCCAGGAA
ATGGGCGTGTCGATCAAGAGCACTTCCGGCCCGGTGCTGGAACGGCCGGGTGATCTGGCGGCGCTGTTGACCAATCTTGA
ACCGCACGATGTGCTGTTCATCGATGAAATCCATCGTCTGTCGCCGATTGTTGAAGAAGTGCTGTACCCGGCCATGGAAG
ATTTCCAGCTCGACATCATGATCGGTGAAGGGCCGGCGGCGCGTTCGATCAAGCTCGATCTGCCGCCGTTCACCCTGGTC
GGTGCGACCACGCGGGCGGGCATGCTGACCAACCCGTTGCGTGACCGTTTCGGCATTGTCCAGCGTCTCGAGTTCTACAG
CACCGCTGACCTGGCGACGATTGTCAGCCGTTCGGCGAGCATCCTCGGTCTGCCGCTGGATCCGGAAGGGTCTTTCGAAA
TTGCCCGTCGCGCCCGCGGTACGCCGCGAATCGCCAACCGGCTGCTGCGTCGGGTGCGGGATTTCGCCGAAGTCCGGGCC
AAGGGCCACATCACCAAGGCTGTCGCGGACCTGGCGCTGAACCTGCTGGATGTCGACGAGCACGGTTTCGATCATCAGGA
CCGGCGTCTGCTGTTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCATCGACAGTCTGGCGGCGGCGATCAGCG
AAGAACGCCACACCATTGAAGACGTGCTCGAGCCGTACCTGATTCAGCAGGGTTACATCATGCGGACGCCGCGCGGCAGG
GTGGTTACCCGTCACGCGTACCTGCATTTTGGTTTAAACATTCCGACACGAATGGGCGAAATGCCCGTGGCAGACGAGTT
TCTCGATGCCGTGGACGATTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(186-259)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(260-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.579

90.085

0.564
  ruvB Streptococcus pneumoniae TIGR4

59.873

88.952

0.533
  ruvB Streptococcus pneumoniae R6

59.873

88.952

0.533
  ruvB Streptococcus pneumoniae D39

59.873

88.952

0.533
  ruvB Synechocystis sp. PCC 6803

55.183

92.918

0.513
  ruvB Helicobacter pylori 26695

53.797

89.518

0.482