Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PFY01_RS12505 Genome accession   NZ_CP115671
Coordinates   2440482..2440979 (-) Length   165 a.a.
NCBI ID   WP_017504124.1    Uniprot ID   A0A2X1BAH6
Organism   Brevundimonas vesicularis strain PL22-8A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2435482..2445979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFY01_RS12490 (PFY01_12490) - 2438247..2438822 (+) 576 WP_271041513.1 superoxide dismutase family protein -
  PFY01_RS12495 (PFY01_12495) - 2438862..2439395 (-) 534 WP_271041514.1 DUF1003 domain-containing protein -
  PFY01_RS12500 (PFY01_12500) - 2439425..2440363 (-) 939 WP_271041515.1 DMT family transporter -
  PFY01_RS12505 (PFY01_12505) ssb 2440482..2440979 (-) 498 WP_017504124.1 single-stranded DNA-binding protein Machinery gene
  PFY01_RS12510 (PFY01_12510) - 2441148..2441570 (-) 423 WP_271041516.1 hypothetical protein -
  PFY01_RS12515 (PFY01_12515) - 2441570..2442241 (-) 672 WP_271041517.1 hypothetical protein -
  PFY01_RS12520 (PFY01_12520) - 2442324..2445029 (-) 2706 WP_271041518.1 transcriptional regulator -
  PFY01_RS12525 (PFY01_12525) - 2445090..2445968 (-) 879 WP_271041519.1 flagellin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17815.66 Da        Isoelectric Point: 5.9696

>NTDB_id=773442 PFY01_RS12505 WP_017504124.1 2440482..2440979(-) (ssb) [Brevundimonas vesicularis strain PL22-8A]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGSSGGGYGGGGGRGDDDYSSGFSTGGANKPSGPKESYDLN
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=773442 PFY01_RS12505 WP_017504124.1 2440482..2440979(-) (ssb) [Brevundimonas vesicularis strain PL22-8A]
ATGGCGGGCAGCGTCAATAAGGTCATTCTGGTCGGCAATCTGGGTCGCGACCCCGAGATCCGCTCCATGCCCAATGGCGA
CCGCATCGCCAACCTCTCCATCGCCACCTCGGAGACCTGGCGCGACAAGTCCTCAGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAGGTGGTCGAGAACTATGTGAAGAAGGGTTCGACCGTCTATATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAAAAGTATTCGACCGAGATCGTCGTCAGCCGCTT
CAAGGGTGAATTGACCATGCTGGGCGGCCGCTCGGAAGGCGGCTCGTCGGGCGGTGGTTACGGCGGCGGCGGTGGTCGCG
GCGATGACGACTATTCCTCGGGCTTCTCCACCGGCGGCGCCAACAAGCCGAGCGGCCCCAAGGAAAGCTACGATCTGAAC
GACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X1BAH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.533
  ssb Vibrio cholerae strain A1552

48

100

0.509
  ssb Neisseria meningitidis MC58

40

100

0.436
  ssb Neisseria gonorrhoeae MS11

40

100

0.436