Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   PF555_RS18180 Genome accession   NZ_CP115645
Coordinates   3818315..3819445 (+) Length   376 a.a.
NCBI ID   WP_031981044.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00371     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3813315..3824445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF555_RS18155 (PF555_18155) - 3813575..3813781 (-) 207 WP_000182542.1 hypothetical protein -
  PF555_RS18160 (PF555_18160) - 3813835..3815949 (-) 2115 WP_001120668.1 TonB-dependent copper receptor -
  PF555_RS18165 (PF555_18165) - 3816022..3816450 (-) 429 WP_000231981.1 DUF2946 family protein -
  PF555_RS18170 (PF555_18170) def 3816487..3817017 (-) 531 WP_001196539.1 peptide deformylase -
  PF555_RS18175 (PF555_18175) tsaP 3817140..3818294 (+) 1155 WP_024432434.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PF555_RS18180 (PF555_18180) dprA 3818315..3819445 (+) 1131 WP_031981044.1 DNA-processing protein DprA Machinery gene
  PF555_RS18185 (PF555_18185) - 3819496..3820065 (+) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  PF555_RS18190 (PF555_18190) - 3820457..3821377 (-) 921 WP_000084546.1 DMT family transporter -
  PF555_RS18195 (PF555_18195) - 3821483..3822133 (-) 651 WP_085943488.1 TetR/AcrR family transcriptional regulator -
  PF555_RS18200 (PF555_18200) - 3822270..3823484 (+) 1215 WP_000372837.1 MFS transporter -
  PF555_RS18205 (PF555_18205) - 3823506..3824270 (+) 765 WP_000786959.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41900.40 Da        Isoelectric Point: 6.5418

>NTDB_id=773255 PF555_RS18180 WP_031981044.1 3818315..3819445(+) (dprA) [Acinetobacter baumannii strain 2022CK-00371]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTADDSGYPSQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGALITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=773255 PF555_RS18180 WP_031981044.1 3818315..3819445(+) (dprA) [Acinetobacter baumannii strain 2022CK-00371]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCATTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGGCAGATGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCCTTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.138

100

0.981

  dprA Acinetobacter baumannii D1279779

97.872

100

0.979

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38