Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QRT07_RS10105 Genome accession   NZ_CP127846
Coordinates   2166653..2167657 (-) Length   334 a.a.
NCBI ID   WP_005457270.1    Uniprot ID   Q87QU7
Organism   Vibrio parahaemolyticus strain VP16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161653..2172657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS10075 (QRT07_10075) tolQ 2161757..2162455 (-) 699 WP_005485405.1 protein TolQ -
  QRT07_RS10080 (QRT07_10080) ybgC 2162445..2162864 (-) 420 WP_005483618.1 tol-pal system-associated acyl-CoA thioesterase -
  QRT07_RS10085 (QRT07_10085) ybgE 2163037..2163339 (-) 303 WP_025501902.1 cyd operon protein YbgE -
  QRT07_RS10090 (QRT07_10090) cydX 2163332..2163439 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  QRT07_RS10095 (QRT07_10095) cydB 2163452..2164588 (-) 1137 WP_005483614.1 cytochrome d ubiquinol oxidase subunit II -
  QRT07_RS10100 (QRT07_10100) cydA 2164606..2166192 (-) 1587 WP_005457265.1 cytochrome ubiquinol oxidase subunit I -
  QRT07_RS10105 (QRT07_10105) ruvB 2166653..2167657 (-) 1005 WP_005457270.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QRT07_RS10110 (QRT07_10110) ruvA 2167679..2168293 (-) 615 WP_005486097.1 Holliday junction branch migration protein RuvA -
  QRT07_RS10115 (QRT07_10115) - 2168372..2169823 (-) 1452 WP_025636357.1 methyl-accepting chemotaxis protein -
  QRT07_RS10120 (QRT07_10120) ruvC 2169945..2170466 (-) 522 WP_005457261.1 crossover junction endodeoxyribonuclease RuvC -
  QRT07_RS10125 (QRT07_10125) aspS 2170595..2172373 (-) 1779 WP_025627521.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37226.63 Da        Isoelectric Point: 4.7025

>NTDB_id=773038 QRT07_RS10105 WP_005457270.1 2166653..2167657(-) (ruvB) [Vibrio parahaemolyticus strain VP16]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=773038 QRT07_RS10105 WP_005457270.1 2166653..2167657(-) (ruvB) [Vibrio parahaemolyticus strain VP16]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAATCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTATTACAA
AGTGCAAGATCTACAGAACATTGTTCAACGCAGTGCAGATTGTCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCAAACCGTCTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTGGATGCTCAGGGTTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAAAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(186-259)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87QU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae R6

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae D39

58.824

96.707

0.569
  ruvB Synechocystis sp. PCC 6803

55.987

92.515

0.518
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494