Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QRT07_RS03135 Genome accession   NZ_CP127846
Coordinates   640735..641169 (-) Length   144 a.a.
NCBI ID   WP_025501252.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 635735..646169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS03115 (QRT07_03115) coaE 636254..636868 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  QRT07_RS03120 (QRT07_03120) pilD 636869..637738 (-) 870 WP_015297252.1 A24 family peptidase Machinery gene
  QRT07_RS03125 (QRT07_03125) pilC 637803..639026 (-) 1224 WP_005479682.1 type II secretion system F family protein Machinery gene
  QRT07_RS03130 (QRT07_03130) pilB 639050..640735 (-) 1686 WP_025635512.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QRT07_RS03135 (QRT07_03135) pilA 640735..641169 (-) 435 WP_025501252.1 pilin Machinery gene
  QRT07_RS03140 (QRT07_03140) nadC 641432..642319 (-) 888 WP_005479699.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QRT07_RS03145 (QRT07_03145) ampD 642412..642963 (+) 552 WP_025635516.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QRT07_RS03150 (QRT07_03150) pdhR 643369..644136 (+) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14846.81 Da        Isoelectric Point: 8.4659

>NTDB_id=773011 QRT07_RS03135 WP_025501252.1 640735..641169(-) (pilA) [Vibrio parahaemolyticus strain VP16]
MKNSKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKDYVAKSAVTSAVGTLKSLLTNADLYTQNNTTATSDLGDIGGNAT
MNALGNITASIEGAGAASNAKSTLKFVFNTGNAAAGDIEYARTPNTPWGCTNNTNPKVSIDSCP

Nucleotide


Download         Length: 435 bp        

>NTDB_id=773011 QRT07_RS03135 WP_025501252.1 640735..641169(-) (pilA) [Vibrio parahaemolyticus strain VP16]
ATGAAAAACAGTAAACAGAAAAAACAGCAAGGTTTTACGTTAATTGAATTGATGATTGTGGTAGCAATTATTGGGGTGTT
ATCAGCAGTCGCAATCCCTGCATATAAAGACTATGTCGCAAAGTCAGCTGTAACCTCTGCTGTGGGTACTTTAAAGTCAT
TACTTACTAATGCTGATTTATATACTCAGAACAACACCACAGCTACTTCCGACTTAGGAGACATCGGTGGGAACGCTACT
ATGAACGCCCTTGGCAATATTACCGCATCAATTGAAGGTGCTGGAGCAGCCTCAAACGCAAAATCTACACTCAAATTTGT
ATTTAATACTGGCAATGCTGCAGCAGGTGACATCGAATATGCTAGGACACCAAACACACCCTGGGGCTGTACAAATAATA
CTAACCCAAAAGTATCTATTGATAGCTGCCCATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Pilin (bacterial filament) (Pilin)

(40-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio parahaemolyticus RIMD 2210633

46.897

100

0.472
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.667

100

0.403
  pilA Vibrio cholerae strain A1552

38.667

100

0.403
  pilA Vibrio cholerae C6706

38.667

100

0.403