Detailed information NTG0772847

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QRO24_RS05545
• Genome accession: NZ_CP127829
• Coordinates: 1141211..1142209 (+)
• Length: 332 a.a.
• NCBI ID: WP_039166859.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain OH/Ck/12965/20
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1136211..1147209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRO24_RS05520 (QRO24_05490)	gorA	1136564..1137913 (-)	1350	WP_409026194.1	glutathione-disulfide reductase	-
QRO24_RS05525 (QRO24_05495)	-	1138020..1138862 (-)	843	WP_409026195.1	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	-
QRO24_RS05530 (QRO24_05500)	-	1138873..1139415 (-)	543	WP_018347344.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
QRO24_RS05535 (QRO24_05505)	-	1139473..1140360 (-)	888	WP_021461819.1	DMT family transporter	-
QRO24_RS05540 (QRO24_05510)	ruvA	1140580..1141188 (+)	609	WP_018347346.1	Holliday junction branch migration protein RuvA	Machinery gene
QRO24_RS05545 (QRO24_05515)	ruvB	1141211..1142209 (+)	999	WP_039166859.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QRO24_RS05550 (QRO24_05520)	hutZ	1142573..1143091 (-)	519	WP_409026196.1	heme utilization protein HutZ	-
QRO24_RS05555 (QRO24_05525)	hutX	1143085..1143594 (-)	510	WP_409026197.1	heme utilization cystosolic carrier protein HutX	-
QRO24_RS05560 (QRO24_05530)	-	1143616..1145748 (-)	2133	WP_409026198.1	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37199.78 Da
• Isoelectric Point: 4.8781

>NTDB_id=772847 QRO24_RS05545 WP_039166859.1 1141211..1142209(+) (ruvB) [Gallibacterium anatis strain OH/Ck/12965/20]
MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIVVRSANCLNLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNDG
FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIA
TLHTYRHFGVSK

Nucleotide

• Length: 999 bp

>NTDB_id=772847 QRO24_RS05545 WP_039166859.1 1141211..1142209(+) (ruvB) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGATTGAAGCAGACCGTATTATCAGCCCTACGGCAAAAGAGGAAGAAGAGTATATCGACCGTGCAATCCGTCCAAAATT
GTTGCAGGATTATGTTGGGCAGCCGCACGTTCGGGAACAGATGGATATTTTTATCAAAGCGGCGAAAATGCGTAATGATG
CACTTGATCATCTGTTGATTTTTGGCCCTCCCGGTTTGGGAAAAACGACATTAGCCAATATTGTCGCCAATGAAATGGGG
GTGAATATTCGCACCACTTCCGGTCCGGTGTTGGAAAAAGCAGGCGATTTGGCAGCAATGTTGACCAATTTAGAGCCTTA
CGACGTGCTGTTTATTGATGAGATTCATCGTTTATCACCGGCAATCGAGGAGGTGTTGTATCCGGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAGGGGCCGGCAGCACGGTCGATTAAATTGGATTTGCCGCCGTTTACGTTGGTTGGCGCA
ACGACGCGTGCCGGATCATTGACTTCGCCATTGCGAGATCGTTTCGGCATTGTGCAACGCTTGGAATTTTATTCCATTGA
AGATTTAACCTCCATTGTGGTGCGTAGCGCAAATTGCCTCAATCTTCAGATTGATGAGCAAGCGGCACACGAAATTGCAC
GCCGTTCACGCGGTACACCTCGAATCGTGAATCGATTATTGCGTCGTGTGCGAGATTATGCCGATGTAAAAAATGACGGT
TTTATTTCGGTAGAGATTGCTAAATTGGCATTAACGATGTTAGATATTGATTCAGAAGGCTTTGACTTTATGGATCGTAA
ATTGTTAATGGCGATTATTGAGCGTTTTGACGGGGGACCGGTCGGTTTGGATAATTTAGCTGCGGCGATCGGTGAAGAGA
AAGAAACAATAGAAGATGTGTTGGAACCTTATTTAATCCAGCAAGGTTTCTTACAACGTACACCGCGAGGAAGAATCGCC
ACACTGCATACTTATCGACATTTTGGAGTAAGTAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.963	97.59	0.614
ruvB	Streptococcus pneumoniae TIGR4	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae R6	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae D39	58.333	97.59	0.569
ruvB	Synechocystis sp. PCC 6803	51.964	99.699	0.518
ruvB	Helicobacter pylori 26695	53.271	96.687	0.515