Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7K64_RS23555 Genome accession   NZ_AP022227
Coordinates   5008422..5008967 (-) Length   181 a.a.
NCBI ID   WP_043210277.1    Uniprot ID   A0AAX0VQA0
Organism   Pseudomonas putida strain WP8-W18-CRE-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5003422..5013967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K64_RS23545 (WP8W18C01_46640) - 5005911..5006681 (-) 771 WP_182816575.1 SDR family NAD(P)-dependent oxidoreductase -
  H7K64_RS23550 (WP8W18C01_46650) - 5006955..5008337 (+) 1383 WP_182816577.1 PLP-dependent aminotransferase family protein -
  H7K64_RS23555 (WP8W18C01_46660) ssb 5008422..5008967 (-) 546 WP_043210277.1 single-stranded DNA-binding protein Machinery gene
  H7K64_RS23560 (WP8W18C01_46670) - 5008977..5010371 (-) 1395 WP_043210280.1 MFS transporter -
  H7K64_RS23565 (WP8W18C01_46680) uvrA 5010501..5013335 (+) 2835 WP_043210283.1 excinuclease ABC subunit UvrA -
  H7K64_RS23570 (WP8W18C01_46690) bfr 5013408..5013872 (-) 465 WP_028690240.1 bacterioferritin -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20132.27 Da        Isoelectric Point: 5.9312

>NTDB_id=77278 H7K64_RS23555 WP_043210277.1 5008422..5008967(-) (ssb) [Pseudomonas putida strain WP8-W18-CRE-01]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVAMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQGGDPYNQGGGNYNQGGGQQQYNQAPRQQAPRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=77278 H7K64_RS23555 WP_043210277.1 5008422..5008967(-) (ssb) [Pseudomonas putida strain WP8-W18-CRE-01]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACTTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCCGGCCAGAAAGTCGAGCGCACCGAGT
GGCACCGTGTTGCCATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAAGGTTCCCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGCAGAACCAGCAACAGGGCGGCGACCCGTACAACCAAGGTGGTGGCAACTACAACC
AAGGTGGTGGCCAGCAGCAGTACAACCAGGCGCCACGCCAGCAGGCTCCGCGTCCACAGCAGGCTCCACAGCGTCCTGCG
CCACAGCAGCCAGCTCCGCAACCGGCCGCTGACTTCGACAGCTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.284

100

0.569
  ssb Glaesserella parasuis strain SC1401

50

100

0.525
  ssb Neisseria meningitidis MC58

50

100

0.508
  ssb Neisseria gonorrhoeae MS11

50.549

100

0.508

Multiple sequence alignment