Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   PAN99_RS17995 Genome accession   NZ_CP115604
Coordinates   3640462..3641607 (+) Length   381 a.a.
NCBI ID   WP_077722992.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-54560     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635462..3646607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAN99_RS17975 (PAN99_17975) - 3635936..3636652 (-) 717 WP_048367767.1 Crp/Fnr family transcriptional regulator -
  PAN99_RS17980 (PAN99_17980) narK 3636750..3637940 (-) 1191 WP_044052814.1 nitrate transporter NarK -
  PAN99_RS17985 (PAN99_17985) argS 3638075..3639745 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  PAN99_RS17990 (PAN99_17990) - 3639742..3640170 (-) 429 WP_003151069.1 DUF1934 domain-containing protein -
  PAN99_RS17995 (PAN99_17995) rapF 3640462..3641607 (+) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  PAN99_RS18000 (PAN99_18000) - 3641591..3641710 (+) 120 WP_015387559.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  PAN99_RS18005 (PAN99_18005) - 3641909..3642112 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  PAN99_RS18010 (PAN99_18010) - 3642126..3642329 (+) 204 WP_003151062.1 hypothetical protein -
  PAN99_RS18015 (PAN99_18015) - 3642738..3643019 (+) 282 WP_014306021.1 hypothetical protein -
  PAN99_RS18020 (PAN99_18020) - 3643063..3643575 (+) 513 WP_015387558.1 stage II sporulation protein M -
  PAN99_RS18025 (PAN99_18025) - 3644166..3644384 (-) 219 WP_048367770.1 LuxR C-terminal-related transcriptional regulator -
  PAN99_RS18030 (PAN99_18030) speB 3644554..3645426 (-) 873 WP_003151054.1 agmatinase -
  PAN99_RS18035 (PAN99_18035) speE 3645486..3646316 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45541.70 Da        Isoelectric Point: 4.6057

>NTDB_id=772758 PAN99_RS17995 WP_077722992.1 3640462..3641607(+) (rapF) [Bacillus velezensis strain FJAT-54560]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=772758 PAN99_RS17995 WP_077722992.1 3640462..3641607(+) (rapF) [Bacillus velezensis strain FJAT-54560]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCTTT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567