Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PEE20_RS15355 Genome accession   NZ_CP115551
Coordinates   3024021..3024626 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Bispebjerg strain 20SAL-1342-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3019021..3029626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PEE20_RS15340 (PEE20_15340) helD 3019238..3021292 (-) 2055 WP_151116270.1 DNA helicase IV -
  PEE20_RS15345 (PEE20_15345) - 3021416..3021862 (+) 447 WP_270804335.1 YccF domain-containing protein -
  PEE20_RS15350 (PEE20_15350) yccS 3021881..3024034 (+) 2154 WP_079959530.1 YccS family putative transporter -
  PEE20_RS15355 (PEE20_15355) sxy/tfoX 3024021..3024626 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  PEE20_RS15360 (PEE20_15360) sulA 3024843..3025352 (+) 510 WP_017465793.1 SOS-induced cell division inhibitor SulA -
  PEE20_RS15365 (PEE20_15365) ompA 3025709..3026761 (+) 1053 WP_001670727.1 porin OmpA -
  PEE20_RS15370 (PEE20_15370) matP 3026833..3027285 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  PEE20_RS15375 (PEE20_15375) - 3027471..3029231 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=772655 PEE20_RS15355 WP_001202375.1 3024021..3024626(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bispebjerg strain 20SAL-1342-3]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=772655 PEE20_RS15355 WP_001202375.1 3024021..3024626(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bispebjerg strain 20SAL-1342-3]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAATATCGATCCTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTCCGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751