Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP62_RS32105 Genome accession   NZ_CP115482
Coordinates   6788118..6788675 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6783118..6793675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP62_RS32085 (PCP62_32065) pilR 6784394..6785731 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP62_RS32090 (PCP62_32070) thiO 6785777..6786871 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  PCP62_RS32095 (PCP62_32075) - 6787006..6787515 (+) 510 WP_003112829.1 GspH/FimT family pseudopilin -
  PCP62_RS32100 (PCP62_32080) - 6787621..6788127 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP62_RS32105 (PCP62_32085) pilV 6788118..6788675 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP62_RS32110 (PCP62_32090) pilW 6788672..6789496 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP62_RS32115 (PCP62_32095) pilX 6789493..6790080 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP62_RS32120 (PCP62_32100) pilY1 6790092..6793583 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=772603 PCP62_RS32105 WP_003119423.1 6788118..6788675(+) (pilV) [Pseudomonas aeruginosa strain F001]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=772603 PCP62_RS32105 WP_003119423.1 6788118..6788675(+) (pilV) [Pseudomonas aeruginosa strain F001]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995