Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QR565_RS21050 Genome accession   NZ_CP127387
Coordinates   4545414..4546472 (-) Length   352 a.a.
NCBI ID   WP_003086123.1    Uniprot ID   Q02IC9
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4540414..4551472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS21020 pal 4540855..4541361 (-) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -
  QR565_RS21025 tolB 4541414..4542712 (-) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  QR565_RS21030 tolA 4542709..4543752 (-) 1044 WP_023084544.1 cell envelope integrity protein TolA -
  QR565_RS21035 tolR 4543755..4544195 (-) 441 WP_003086126.1 protein TolR -
  QR565_RS21040 tolQ 4544218..4544913 (-) 696 WP_003086125.1 protein TolQ -
  QR565_RS21045 ybgC 4544915..4545361 (-) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  QR565_RS21050 ruvB 4545414..4546472 (-) 1059 WP_003086123.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QR565_RS21055 ruvA 4546483..4547088 (-) 606 WP_003086122.1 Holliday junction branch migration protein RuvA -
  QR565_RS21060 ruvC 4547105..4547629 (-) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  QR565_RS21065 - 4547714..4548460 (-) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QR565_RS21070 aspS 4548527..4550302 (-) 1776 WP_023084545.1 aspartate--tRNA ligase -
  QR565_RS21075 - 4550742..4551212 (+) 471 WP_003086103.1 Dps family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38932.67 Da        Isoelectric Point: 5.1792

>NTDB_id=772603 QR565_RS21050 WP_003086123.1 4545414..4546472(-) (ruvB) [Pseudomonas aeruginosa strain 101901100740-1]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=772603 QR565_RS21050 WP_003086123.1 4545414..4546472(-) (ruvB) [Pseudomonas aeruginosa strain 101901100740-1]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTATTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02IC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491