Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QR565_RS03580 Genome accession   NZ_CP127387
Coordinates   744056..744553 (+) Length   165 a.a.
NCBI ID   WP_033999905.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 739056..749553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS03565 bfr 739064..739528 (+) 465 WP_003093668.1 bacterioferritin -
  QR565_RS03570 uvrA 739600..742437 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  QR565_RS03575 - 742651..744039 (+) 1389 WP_033999903.1 MFS transporter -
  QR565_RS03580 ssb 744056..744553 (+) 498 WP_033999905.1 single-stranded DNA-binding protein Machinery gene
  QR565_RS03585 pchA 744642..746072 (-) 1431 WP_033999907.1 isochorismate synthase PchA -
  QR565_RS03590 pchB 746069..746374 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  QR565_RS03595 pchC 746374..747129 (-) 756 WP_003106952.1 pyochelin biosynthesis editing thioesterase PchC -
  QR565_RS03600 pchD 747126..748769 (-) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18585.51 Da        Isoelectric Point: 5.2781

>NTDB_id=772562 QR565_RS03580 WP_033999905.1 744056..744553(+) (ssb) [Pseudomonas aeruginosa strain 101901100740-1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQVPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=772562 QR565_RS03580 WP_033999905.1 744056..744553(+) (ssb) [Pseudomonas aeruginosa strain 101901100740-1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGTCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.582
  ssb Neisseria meningitidis MC58

47.486

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.515