Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PDI73_RS09340 Genome accession   NZ_CP115479
Coordinates   1931776..1932276 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1926776..1937276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS09315 (PDI73_09315) gnd 1927843..1928748 (-) 906 WP_038603774.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  PDI73_RS09320 (PDI73_09320) - 1929113..1929961 (+) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  PDI73_RS09325 (PDI73_09325) - 1929999..1930307 (+) 309 WP_017865196.1 DUF960 domain-containing protein -
  PDI73_RS09330 (PDI73_09330) - 1930381..1931154 (-) 774 WP_003131951.1 metallophosphoesterase -
  PDI73_RS09335 (PDI73_09335) rpsR 1931354..1931599 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  PDI73_RS09340 (PDI73_09340) ssb 1931776..1932276 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  PDI73_RS09345 (PDI73_09345) rpsF 1932306..1932599 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  PDI73_RS09350 (PDI73_09350) - 1932791..1933645 (-) 855 WP_012898664.1 undecaprenyl-diphosphate phosphatase -
  PDI73_RS09355 (PDI73_09355) - 1934168..1935634 (+) 1467 WP_017865200.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=772503 PDI73_RS09340 WP_003131953.1 1931776..1932276(-) (ssb) [Lactococcus lactis strain EP2]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=772503 PDI73_RS09340 WP_003131953.1 1931776..1932276(-) (ssb) [Lactococcus lactis strain EP2]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCGCGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373