Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PDI73_RS06845 Genome accession   NZ_CP115479
Coordinates   1448195..1449184 (-) Length   329 a.a.
NCBI ID   WP_277730111.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443195..1454184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS06830 (PDI73_06830) - 1444561..1445487 (-) 927 WP_277730109.1 peptidyl-prolyl cis-trans isomerase -
  PDI73_RS06835 (PDI73_06835) - 1445641..1446324 (-) 684 WP_033899351.1 O-methyltransferase -
  PDI73_RS06840 (PDI73_06840) pepF 1446327..1448132 (-) 1806 WP_033899349.1 oligoendopeptidase F Regulator
  PDI73_RS06845 (PDI73_06845) coiA 1448195..1449184 (-) 990 WP_277730111.1 competence protein CoiA Machinery gene
  PDI73_RS06850 (PDI73_06850) - 1449258..1450343 (-) 1086 WP_017864887.1 YdcF family protein -
  PDI73_RS06855 (PDI73_06855) - 1450505..1451353 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  PDI73_RS06860 (PDI73_06860) - 1451545..1452966 (-) 1422 WP_012898314.1 NCS2 family permease -
  PDI73_RS06865 (PDI73_06865) - 1453273..1454109 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39538.16 Da        Isoelectric Point: 8.5227

>NTDB_id=772480 PDI73_RS06845 WP_277730111.1 1448195..1449184(-) (coiA) [Lactococcus lactis strain EP2]
MLIAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFFINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=772480 PDI73_RS06845 WP_277730111.1 1448195..1449184(-) (coiA) [Lactococcus lactis strain EP2]
ATGTTGATAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTAGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTTATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.233

99.088

0.736
  coiA Streptococcus pneumoniae TIGR4

43.168

97.872

0.422
  coiA Streptococcus pneumoniae Rx1

43.168

97.872

0.422
  coiA Streptococcus pneumoniae D39

43.168

97.872

0.422
  coiA Streptococcus pneumoniae R6

43.168

97.872

0.422
  coiA Streptococcus mitis NCTC 12261

42.947

96.96

0.416