Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QRA10_RS26630 Genome accession   NZ_CP127342
Coordinates   5745009..5745506 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 18C53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5740009..5750506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA10_RS26615 (QRA10_26585) bfr 5740018..5740482 (+) 465 WP_003093668.1 bacterioferritin -
  QRA10_RS26620 (QRA10_26590) uvrA 5740553..5743390 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  QRA10_RS26625 (QRA10_26595) - 5743604..5744992 (+) 1389 WP_003103910.1 MFS transporter -
  QRA10_RS26630 (QRA10_26600) ssb 5745009..5745506 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QRA10_RS26635 (QRA10_26605) - 5745709..5746848 (-) 1140 Protein_5248 IS3 family transposase -
  QRA10_RS26640 (QRA10_26610) - 5747805..5748533 (-) 729 WP_124074719.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=772454 QRA10_RS26630 WP_003114685.1 5745009..5745506(+) (ssb) [Pseudomonas aeruginosa strain 18C53]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=772454 QRA10_RS26630 WP_003114685.1 5745009..5745506(+) (ssb) [Pseudomonas aeruginosa strain 18C53]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515