Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QRX37_RS22575 Genome accession   NZ_CP127324
Coordinates   4667587..4668123 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 980-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4662587..4673123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX37_RS22555 (QRX37_22525) aphA 4662875..4663588 (+) 714 WP_001226928.1 acid phosphatase AphA -
  QRX37_RS22560 (QRX37_22530) yjbQ 4663699..4664115 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QRX37_RS22565 (QRX37_22535) yjbR 4664119..4664475 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QRX37_RS22570 (QRX37_22540) uvrA 4664510..4667332 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QRX37_RS22575 (QRX37_22545) ssb 4667587..4668123 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QRX37_RS22580 (QRX37_22550) yjcB 4668222..4668503 (-) 282 WP_001295689.1 YjcB family protein -
  QRX37_RS22585 (QRX37_22555) pdeC 4668933..4670519 (+) 1587 WP_000019514.1 c-di-GMP phosphodiesterase PdeC -
  QRX37_RS22590 (QRX37_22560) soxS 4670522..4670845 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QRX37_RS22595 (QRX37_22565) soxR 4670931..4671395 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=772354 QRX37_RS22575 WP_000168305.1 4667587..4668123(+) (ssb) [Escherichia coli strain 980-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=772354 QRX37_RS22575 WP_000168305.1 4667587..4668123(+) (ssb) [Escherichia coli strain 980-2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489