Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QRX37_RS07485 Genome accession   NZ_CP127324
Coordinates   1493337..1494347 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain 980-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1488337..1499347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX37_RS07455 (QRX37_07430) nudB 1490061..1490513 (+) 453 WP_077902349.1 dihydroneopterin triphosphate diphosphatase -
  QRX37_RS07460 (QRX37_07435) yebC 1490542..1491282 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QRX37_RS07465 (QRX37_07440) ruvC 1491317..1491838 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  QRX37_RS07470 (QRX37_07445) yebB 1491840..1492442 (-) 603 WP_001024926.1 YebB family permuted papain-like enzyme -
  QRX37_RS07475 (QRX37_07450) yobI 1492513..1492578 (+) 66 WP_075861838.1 stress response small protein YobI -
  QRX37_RS07480 (QRX37_07455) ruvA 1492717..1493328 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  QRX37_RS07485 (QRX37_07460) ruvB 1493337..1494347 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QRX37_RS07490 (QRX37_07465) znuB 1494492..1495277 (-) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  QRX37_RS07495 (QRX37_07470) znuC 1495274..1496029 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  QRX37_RS07500 (QRX37_07475) znuA 1496108..1497040 (+) 933 WP_024179478.1 zinc ABC transporter substrate-binding protein ZnuA -
  QRX37_RS07505 (QRX37_07480) mepM 1497056..1498378 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=772296 QRX37_RS07485 WP_000568519.1 1493337..1494347(+) (ruvB) [Escherichia coli strain 980-2]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=772296 QRX37_RS07485 WP_000568519.1 1493337..1494347(+) (ruvB) [Escherichia coli strain 980-2]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACGTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAACCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCTAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGGGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATTATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATTGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCTGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494