Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PCS90_RS01000 Genome accession   NZ_CP115386
Coordinates   221483..222019 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CUVET20-PYO2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 216483..227019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS90_RS00980 (PCS90_00980) aphA 216597..217310 (+) 714 WP_001226933.1 acid phosphatase AphA -
  PCS90_RS00985 (PCS90_00985) yjbQ 217421..217837 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PCS90_RS00990 (PCS90_00990) yjbR 217841..218197 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PCS90_RS00995 (PCS90_00995) uvrA 218406..221228 (-) 2823 WP_001774120.1 excinuclease ABC subunit UvrA -
  PCS90_RS01000 (PCS90_01000) ssb 221483..222019 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PCS90_RS01005 (PCS90_01005) yjcB 222118..222399 (-) 282 WP_001296643.1 YjcB family protein -
  PCS90_RS01010 (PCS90_01010) pdeC 222828..224381 (+) 1554 WP_001540433.1 c-di-GMP phosphodiesterase PdeC -
  PCS90_RS01015 (PCS90_01015) soxS 224417..224740 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PCS90_RS01020 (PCS90_01020) soxR 224826..225290 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=772075 PCS90_RS01000 WP_000168305.1 221483..222019(+) (ssb) [Escherichia coli strain CUVET20-PYO2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=772075 PCS90_RS01000 WP_000168305.1 221483..222019(+) (ssb) [Escherichia coli strain CUVET20-PYO2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489