Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AVT_RS15385 Genome accession   NZ_CP115303
Coordinates   2989382..2989894 (+) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus tropicus strain JMT105-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2984382..2994894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS15355 (AVT_15355) spo0J 2984832..2985683 (+) 852 WP_001051839.1 stage 0 sporulation protein Spo0J -
  AVT_RS15360 (AVT_15360) yyaC 2985704..2986300 (-) 597 WP_087968538.1 spore protease YyaC -
  AVT_RS15365 (AVT_15365) - 2986559..2987440 (+) 882 WP_087968537.1 mechanosensitive ion channel family protein -
  AVT_RS15370 (AVT_15370) - 2987461..2987658 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  AVT_RS15375 (AVT_15375) ychF 2987774..2988874 (+) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  AVT_RS15380 (AVT_15380) rpsF 2989065..2989355 (+) 291 WP_001233778.1 30S ribosomal protein S6 -
  AVT_RS15385 (AVT_15385) ssbA 2989382..2989894 (+) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  AVT_RS15390 (AVT_15390) rpsR 2989940..2990173 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  AVT_RS15395 (AVT_15395) - 2990255..2991190 (+) 936 WP_140349829.1 YybS family protein -
  AVT_RS15400 (AVT_15400) - 2991269..2993242 (+) 1974 WP_270184618.1 DHH family phosphoesterase -
  AVT_RS15405 (AVT_15405) rplI 2993239..2993685 (+) 447 WP_000864235.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=771736 AVT_RS15385 WP_000981966.1 2989382..2989894(+) (ssbA) [Bacillus tropicus strain JMT105-2]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=771736 AVT_RS15385 WP_000981966.1 2989382..2989894(+) (ssbA) [Bacillus tropicus strain JMT105-2]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394