NTDB

Overview

Name	ruvB	Type	Machinery gene
Locus tag	QQ984_RS14740	Genome accession	NZ_CP127223
Coordinates	2815103..2816107 (-)	Length	334 a.a.
NCBI ID	WP_003183985.1	Uniprot ID	Q65GP6
Organism	Bacillus licheniformis strain Jrh14-10
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2810103..2821107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ984_RS14710 (QQ984_14710)	-	2810971..2811621 (-)	651	WP_003183974.1	DUF421 domain-containing protein	-
QQ984_RS14715 (QQ984_14715)	-	2811777..2812160 (+)	384	WP_003183976.1	TIGR04086 family membrane protein	-
QQ984_RS14720 (QQ984_14720)	yajC	2812357..2812620 (-)	264	WP_085959518.1	preprotein translocase subunit YajC	-
QQ984_RS14725 (QQ984_14725)	tgt	2812667..2813812 (-)	1146	WP_003183980.1	tRNA guanosine(34) transglycosylase Tgt	-
QQ984_RS14730 (QQ984_14730)	queA	2813841..2814869 (-)	1029	WP_269195070.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
QQ984_RS14735 (QQ984_14735)	-	2814910..2815110 (-)	201	WP_003183984.1	DUF2905 domain-containing protein	-
QQ984_RS14740 (QQ984_14740)	ruvB	2815103..2816107 (-)	1005	WP_003183985.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QQ984_RS14745 (QQ984_14745)	ruvA	2816117..2816722 (-)	606	WP_003183986.1	Holliday junction branch migration protein RuvA	Machinery gene
QQ984_RS14750 (QQ984_14750)	-	2816845..2817366 (-)	522	WP_003183987.1	intercompartmental signaling factor BofC	-
QQ984_RS14755 (QQ984_14755)	-	2817609..2818259 (+)	651	WP_003183988.1	protein kinase family protein	-
QQ984_RS14760 (QQ984_14760)	-	2818537..2818716 (-)	180	WP_003183990.1	small acid-soluble spore protein H	-
QQ984_RS14765 (QQ984_14765)	-	2818812..2819276 (-)	465	WP_003183991.1	DinB family protein	-
QQ984_RS14770 (QQ984_14770)	-	2819337..2820047 (-)	711	WP_003183992.1	poly-gamma-glutamate hydrolase family protein	-
QQ984_RS14775 (QQ984_14775)	-	2820451..2820630 (+)	180	WP_003183993.1	hypothetical protein	-
QQ984_RS14780 (QQ984_14780)	-	2820722..2821048 (-)	327	WP_003183994.1	hypothetical protein	-

Sequence

Protein

Download Length: 334 a.a. Molecular weight: 37286.73 Da Isoelectric Point: 4.9033

                                >NTDB_id=771502 QQ984_RS14740 WP_003183985.1 2815103..2816107(-) (ruvB) [Bacillus licheniformis strain Jrh14-10]

MDERLVSSELDNHESAIEQSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYGPPGLGKTTLAAIIANEMGVN

LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT

RVGLLTAPLRDRFGVLSRLEYYTRDELSEIVIRTAELFEVDIDSLSALEIARRSRGTPRIANRLLRRVRDFAQVLGNSSI

TEEVAVDALERLQVDKLGLDHIDRKLLMGMIEKFGGGPVGIDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP

DVYSHFKMEVPNHD

Nucleotide

Download Length: 1005 bp

                                >NTDB_id=771502 QQ984_RS14740 WP_003183985.1 2815103..2816107(-) (ruvB) [Bacillus licheniformis strain Jrh14-10]

ATGGATGAGCGGCTTGTATCAAGTGAACTAGACAACCATGAATCAGCGATTGAGCAAAGTCTGCGTCCGCAAAGACTTGC

TCAGTATATCGGCCAGGAAAAAGTGAAAGATAACCTCAAGGTTTTCATCGAAGCTGCGAAAATGCGGGAGGAAACCCTTG

ACCATGTCTTATTGTACGGGCCGCCGGGATTGGGAAAAACGACGCTCGCCGCGATCATCGCCAACGAAATGGGAGTCAAT

CTCAGAACGACGTCAGGTCCGGCGATCGAGCGCCCCGGCGATTTGGCGGCGATATTAACGGCTCTGGAGCCAGGTGACGT

TTTATTTATAGACGAGATCCACCGCCTGCACCGTTCGATCGAAGAGGTGCTGTATCCTGCGATGGAAGATTTCTGCCTTG

ATATCGTGATCGGCAAAGGACCGTCGGCACGTTCTGTGAGGCTCGATCTTCCTCCTTTTACCCTCGTCGGCGCGACCACA

AGGGTTGGGCTTTTAACCGCGCCTCTCAGGGACAGGTTCGGCGTTCTGTCGAGGCTTGAGTATTACACGCGTGATGAGCT

TTCAGAAATCGTGATCAGAACGGCAGAGCTGTTTGAAGTCGACATCGATTCGCTCTCGGCTCTCGAAATCGCGAGACGGT

CAAGAGGGACGCCGCGGATTGCCAACAGGCTTTTAAGGAGGGTCAGGGATTTTGCCCAGGTGCTTGGAAACAGCTCCATC

ACAGAGGAAGTGGCGGTTGATGCGCTTGAACGCCTCCAGGTTGATAAACTCGGGCTTGACCATATCGACCGCAAGCTTTT

GATGGGCATGATCGAAAAATTTGGCGGCGGCCCCGTCGGCATCGATACGATTTCGGCTACTATCGGTGAGGAGTCTCACA

CGATTGAGGATGTGTATGAGCCGTATCTTCTTCAAATCGGTTTTATTCAAAGAACGCCGCGGGGGCGCATCGTAACCCCT

GATGTTTACAGCCACTTTAAAATGGAGGTTCCGAACCATGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-327)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q65GP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	88.024	100	0.88
ruvB	Streptococcus pneumoniae TIGR4	61.35	97.605	0.599
ruvB	Streptococcus pneumoniae R6	61.35	97.605	0.599
ruvB	Streptococcus pneumoniae D39	61.35	97.605	0.599
ruvB	Synechocystis sp. PCC 6803	57.402	99.102	0.569
ruvB	Helicobacter pylori 26695	53.012	99.401	0.527

Detailed information NTG0771502