Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PCP88_RS29025 Genome accession   NZ_CP115291
Coordinates   6166017..6167354 (+) Length   445 a.a.
NCBI ID   WP_073655185.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F003     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6161017..6172354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP88_RS29000 (PCP88_29000) pgeF 6161160..6161888 (-) 729 WP_073655183.1 peptidoglycan editing factor PgeF -
  PCP88_RS29005 (PCP88_29005) rluD 6161885..6162847 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCP88_RS29010 (PCP88_29010) - 6162993..6164018 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  PCP88_RS29015 (PCP88_29015) - 6164175..6164420 (+) 246 WP_003102591.1 PP0621 family protein -
  PCP88_RS29020 (PCP88_29020) pilS 6164410..6166002 (+) 1593 WP_073655184.1 two-component system sensor histidine kinase PilS Regulator
  PCP88_RS29025 (PCP88_29025) pilR 6166017..6167354 (+) 1338 WP_073655185.1 two-component system response regulator PilR Regulator
  PCP88_RS29030 (PCP88_29030) thiO 6167400..6168494 (-) 1095 WP_073655190.1 glycine oxidase ThiO -
  PCP88_RS29035 (PCP88_29035) - 6168629..6169138 (+) 510 WP_073655186.1 GspH/FimT family pseudopilin -
  PCP88_RS29040 (PCP88_29040) - 6169244..6169750 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP88_RS29045 (PCP88_29045) pilV 6169741..6170298 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP88_RS29050 (PCP88_29050) pilW 6170295..6171119 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PCP88_RS29055 (PCP88_29055) pilX 6171116..6171703 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49751.09 Da        Isoelectric Point: 5.8654

>NTDB_id=771459 PCP88_RS29025 WP_073655185.1 6166017..6167354(+) (pilR) [Pseudomonas aeruginosa strain F003]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAIDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=771459 PCP88_RS29025 WP_073655185.1 6166017..6167354(+) (pilR) [Pseudomonas aeruginosa strain F003]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCAT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

50.98

100

0.526
  luxO Vibrio cholerae strain A1552

37.946

100

0.382