Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP88_RS29045 Genome accession   NZ_CP115291
Coordinates   6169741..6170298 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6164741..6175298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP88_RS29025 (PCP88_29025) pilR 6166017..6167354 (+) 1338 WP_073655185.1 two-component system response regulator PilR Regulator
  PCP88_RS29030 (PCP88_29030) thiO 6167400..6168494 (-) 1095 WP_073655190.1 glycine oxidase ThiO -
  PCP88_RS29035 (PCP88_29035) - 6168629..6169138 (+) 510 WP_073655186.1 GspH/FimT family pseudopilin -
  PCP88_RS29040 (PCP88_29040) - 6169244..6169750 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP88_RS29045 (PCP88_29045) pilV 6169741..6170298 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP88_RS29050 (PCP88_29050) pilW 6170295..6171119 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PCP88_RS29055 (PCP88_29055) pilX 6171116..6171703 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP88_RS29060 (PCP88_29060) pilY1 6171715..6175206 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=771460 PCP88_RS29045 WP_003119423.1 6169741..6170298(+) (pilV) [Pseudomonas aeruginosa strain F003]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771460 PCP88_RS29045 WP_003119423.1 6169741..6170298(+) (pilV) [Pseudomonas aeruginosa strain F003]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995