Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | H7K70_RS01925 | Genome accession | NZ_AP022213 |
| Coordinates | 382846..383991 (+) | Length | 381 a.a. |
| NCBI ID | WP_044403589.1 | Uniprot ID | A0AB36F620 |
| Organism | Metapseudomonas otitidis strain WP8-S17-CRE-03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 377846..388991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7K70_RS01895 (WP8S17C03_03770) | - | 377935..378231 (-) | 297 | WP_182851504.1 | DUF167 domain-containing protein | - |
| H7K70_RS01900 (WP8S17C03_03780) | - | 378231..378824 (-) | 594 | WP_107330252.1 | YggT family protein | - |
| H7K70_RS01905 (WP8S17C03_03790) | - | 378916..380103 (-) | 1188 | WP_182851505.1 | hypothetical protein | - |
| H7K70_RS01910 (WP8S17C03_03800) | proC | 380106..380924 (-) | 819 | WP_182851506.1 | pyrroline-5-carboxylate reductase | - |
| H7K70_RS01915 (WP8S17C03_03810) | - | 380942..381634 (-) | 693 | WP_160480527.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| H7K70_RS01920 (WP8S17C03_03820) | pilT | 381703..382737 (+) | 1035 | WP_142012818.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| H7K70_RS01925 (WP8S17C03_03830) | pilU | 382846..383991 (+) | 1146 | WP_044403589.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| H7K70_RS29155 (WP8S17C03_03840) | - | 383933..385378 (-) | 1446 | WP_182851507.1 | TIGR03915 family putative DNA repair protein | - |
| H7K70_RS01935 (WP8S17C03_03850) | - | 385378..386589 (-) | 1212 | WP_069566424.1 | putative DNA modification/repair radical SAM protein | - |
| H7K70_RS01940 (WP8S17C03_03860) | - | 386696..387091 (+) | 396 | WP_074967204.1 | TM2 domain-containing protein | - |
| H7K70_RS01945 (WP8S17C03_03870) | - | 387150..388421 (-) | 1272 | WP_182851508.1 | dihydroorotase | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 42485.80 Da Isoelectric Point: 6.7727
>NTDB_id=77142 H7K70_RS01925 WP_044403589.1 382846..383991(+) (pilU) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKVMPVTKNPMSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEQLKLPEVLKKLAMTKRGLVLFVGATGTGKSTSLAAMIGYRNKNSSGHIISIED
PIEYIHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTRETMDHAVAFAETGHLCLATLHANNANQALDRI
INFFPADRQQQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLVADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYNLYSQGEITYEDALLYADSANDLRLMIKLGSETDGEHLTSISGGLSLEVSEDDPGRRFR
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKVMPVTKNPMSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEQLKLPEVLKKLAMTKRGLVLFVGATGTGKSTSLAAMIGYRNKNSSGHIISIED
PIEYIHQHQGCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTRETMDHAVAFAETGHLCLATLHANNANQALDRI
INFFPADRQQQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLVADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYNLYSQGEITYEDALLYADSANDLRLMIKLGSETDGEHLTSISGGLSLEVSEDDPGRRFR
Nucleotide
Download Length: 1146 bp
>NTDB_id=77142 H7K70_RS01925 WP_044403589.1 382846..383991(+) (pilU) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
ATGGAATTCGAGAAACTGTTGCGCCTGATGGTCGAGAAGGGCGGTTCGGACCTGTTCATCACGGCCGGTGTGCCGCCGTC
GATGAAGGTCAACGGCAAGGTCATGCCGGTCACCAAGAACCCCATGTCGCCGGAGCAGACCCGGGAAACCGTGCTGGGGG
TGATGAACGAGCAGCAGCGCCGCGACTTTGCCGAGAACCACGAGTGCAACTTCGCCATCAGCGCCCGGGGCATCGGCCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAACATTCCCACCCTGGA
GCAGCTCAAGCTGCCCGAGGTGCTGAAGAAGCTGGCCATGACCAAGCGCGGCCTGGTGCTCTTCGTCGGTGCCACCGGCA
CCGGCAAGTCCACGTCCCTGGCGGCGATGATCGGCTACCGCAACAAGAACAGCTCCGGCCACATCATCTCCATCGAAGAC
CCCATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGTGAAGTGGGGATCGACACCGAATCCTTCGAGGT
GGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATTCTCATCGGCGAGGTGCGGACCCGCGAGACCATGGACCACG
CCGTGGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCTGCCGACCGTCAGCAGCAGGTGTGGATGGACCTGTCCCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGACGGCAAGGGGCGCCGCGCGGTGATCGAGGTGCTGATCAACACCCCGCTGGTGGCCGACCTGA
TCCGCAAGGGCGAGGTCCACGAGCTCAAGCCGCTGATGAAACGCTCCACCGAGCAGGGTATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACTCCCAGGGCGAGATCACCTACGAAGACGCCCTGCTCTACGCTGACTCGGCGAACGACCTGCGCCT
GATGATCAAGCTCGGTTCCGAGACCGACGGCGAACACCTCACCAGCATCAGTGGCGGGCTGTCCCTGGAAGTCTCGGAAG
ACGATCCGGGCCGCCGCTTCCGCTGA
ATGGAATTCGAGAAACTGTTGCGCCTGATGGTCGAGAAGGGCGGTTCGGACCTGTTCATCACGGCCGGTGTGCCGCCGTC
GATGAAGGTCAACGGCAAGGTCATGCCGGTCACCAAGAACCCCATGTCGCCGGAGCAGACCCGGGAAACCGTGCTGGGGG
TGATGAACGAGCAGCAGCGCCGCGACTTTGCCGAGAACCACGAGTGCAACTTCGCCATCAGCGCCCGGGGCATCGGCCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAACATTCCCACCCTGGA
GCAGCTCAAGCTGCCCGAGGTGCTGAAGAAGCTGGCCATGACCAAGCGCGGCCTGGTGCTCTTCGTCGGTGCCACCGGCA
CCGGCAAGTCCACGTCCCTGGCGGCGATGATCGGCTACCGCAACAAGAACAGCTCCGGCCACATCATCTCCATCGAAGAC
CCCATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGTGAAGTGGGGATCGACACCGAATCCTTCGAGGT
GGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATTCTCATCGGCGAGGTGCGGACCCGCGAGACCATGGACCACG
CCGTGGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCTGCCGACCGTCAGCAGCAGGTGTGGATGGACCTGTCCCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGACGGCAAGGGGCGCCGCGCGGTGATCGAGGTGCTGATCAACACCCCGCTGGTGGCCGACCTGA
TCCGCAAGGGCGAGGTCCACGAGCTCAAGCCGCTGATGAAACGCTCCACCGAGCAGGGTATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACTCCCAGGGCGAGATCACCTACGAAGACGCCCTGCTCTACGCTGACTCGGCGAACGACCTGCGCCT
GATGATCAAGCTCGGTTCCGAGACCGACGGCGAACACCTCACCAGCATCAGTGGCGGGCTGTCCCTGGAAGTCTCGGAAG
ACGATCCGGGCCGCCGCTTCCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
92.126 |
100 |
0.921 |
| pilU | Acinetobacter baylyi ADP1 |
63.866 |
93.701 |
0.598 |
| pilU | Vibrio cholerae strain A1552 |
58.857 |
91.864 |
0.541 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.75 |
88.189 |
0.386 |