Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QOM21_RS29945 Genome accession   NZ_CP127172
Coordinates   6825402..6826505 (+) Length   367 a.a.
NCBI ID   WP_407554134.1    Uniprot ID   -
Organism   Streptomyces sp. Pv4-95 voucher LV 740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6820402..6831505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM21_RS29915 (QOM21_29925) - 6820822..6821367 (+) 546 WP_407554129.1 hypothetical protein -
  QOM21_RS29920 (QOM21_29930) pdxS 6821497..6822408 (+) 912 WP_398557490.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QOM21_RS29925 (QOM21_29935) pdxT 6822416..6823009 (+) 594 WP_407554130.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QOM21_RS29930 (QOM21_29940) - 6823115..6823867 (+) 753 WP_407554131.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QOM21_RS29935 (QOM21_29945) ruvC 6824085..6824663 (+) 579 WP_407554132.1 crossover junction endodeoxyribonuclease RuvC -
  QOM21_RS29940 (QOM21_29950) ruvA 6824660..6825280 (+) 621 WP_407554133.1 Holliday junction branch migration protein RuvA -
  QOM21_RS29945 (QOM21_29955) ruvB 6825402..6826505 (+) 1104 WP_407554134.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QOM21_RS29950 (QOM21_29960) yajC 6826668..6827207 (+) 540 WP_407554135.1 preprotein translocase subunit YajC -
  QOM21_RS29955 (QOM21_29965) secD 6827359..6829143 (+) 1785 WP_407554136.1 protein translocase subunit SecD -
  QOM21_RS29960 (QOM21_29970) secF 6829145..6830263 (+) 1119 WP_407554137.1 protein translocase subunit SecF -
  QOM21_RS29965 (QOM21_29975) - 6830260..6830808 (+) 549 WP_407554138.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38917.27 Da        Isoelectric Point: 4.7039

>NTDB_id=771396 QOM21_RS29945 WP_407554134.1 6825402..6826505(+) (ruvB) [Streptomyces sp. Pv4-95 voucher LV 740]
MNWDDTAPSTADDIAADAATGAADRLVGADADGEDTAVEAALRPKDLEEFVGQERVREQLDLVLRAARARGATADHVLLS
GAPGLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGK
GPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPVELERVIHRSAGLLDVHIEADGAAEIAGRSRGTPR
IANRLLRRVRDYAQVKADGVITREIASQALGVYEVDERGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVA
EPFLVREGLLARTPRGRIATPAAWAHLGLVPPQQQSGGTGQQGLFGG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=771396 QOM21_RS29945 WP_407554134.1 6825402..6826505(+) (ruvB) [Streptomyces sp. Pv4-95 voucher LV 740]
GTGAACTGGGACGACACCGCACCGTCCACCGCCGATGACATCGCCGCCGACGCCGCCACCGGCGCGGCCGACCGGCTCGT
CGGGGCGGACGCCGACGGCGAGGACACCGCCGTCGAGGCCGCTCTGCGGCCCAAGGACCTCGAAGAATTCGTGGGCCAGG
AGCGGGTGCGCGAACAGCTCGACCTGGTGCTGCGGGCGGCCCGCGCGCGCGGCGCCACCGCCGACCACGTCCTGCTGTCC
GGGGCCCCGGGGCTCGGCAAGACCACCCTGTCCATGATCATCGCGGCCGAGATGGGCGCCCCGATCCGCATCACCTCCGG
CCCCGCCATCCAGCACGCCGGAGATCTCGCCGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTGGACGAGA
TCCACCGGATGTCCCGGCCCGCCGAGGAAATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAG
GGCCCGGGCGCCACCGCCATCCCCCTGGAACTCCCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGCCTGCTGCC
GCCCCCGCTGCGGGACCGCTTCGGCTTCACCGGCCACATGGAGTTCTACGCCCCCGTCGAGCTGGAGCGCGTCATCCACC
GCTCGGCCGGCCTGCTGGACGTCCACATAGAGGCCGATGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCGCGT
ATCGCCAACCGCCTGCTGCGCCGCGTCCGCGACTACGCCCAGGTCAAGGCGGACGGCGTGATCACCCGCGAGATCGCCTC
GCAGGCCCTGGGCGTCTACGAGGTCGACGAGCGCGGCCTGGACCGCTTGGATCGTGCCGTGCTGACGGCCCTGCTCAAGC
TCTTCGGCGGCGGCCCGGTGGGCCTGTCGACGCTGGCCGTCGCGGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCC
GAGCCCTTCCTGGTGCGCGAGGGCCTGCTCGCCCGCACCCCCCGTGGCCGGATCGCCACCCCCGCGGCCTGGGCCCACCT
GGGGCTCGTTCCGCCGCAGCAGCAATCGGGAGGAACCGGTCAGCAGGGCCTGTTCGGCGGCTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(203-276)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(42-200)

RuvB C-terminal winged helix domain (WHD_RuvB)

(277-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.333

89.918

0.48
  ruvB Synechocystis sp. PCC 6803

54.14

85.559

0.463
  ruvB Streptococcus pneumoniae R6

51.543

88.283

0.455
  ruvB Streptococcus pneumoniae D39

51.543

88.283

0.455
  ruvB Streptococcus pneumoniae TIGR4

51.543

88.283

0.455
  ruvB Helicobacter pylori 26695

50.629

86.649

0.439