Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QPK52_RS22800 Genome accession   NZ_CP127170
Coordinates   5056076..5057164 (+) Length   362 a.a.
NCBI ID   WP_410539319.1    Uniprot ID   -
Organism   Streptomyces sp. KL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5051076..5062164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK52_RS22770 - 5051186..5051746 (+) 561 WP_410539312.1 hypothetical protein -
  QPK52_RS22775 pdxS 5052002..5052931 (+) 930 WP_410539313.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QPK52_RS22780 pdxT 5053081..5053674 (+) 594 WP_410539314.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QPK52_RS22785 - 5053744..5054496 (+) 753 WP_093662518.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QPK52_RS22790 ruvC 5054635..5055294 (+) 660 WP_410539316.1 crossover junction endodeoxyribonuclease RuvC -
  QPK52_RS22795 ruvA 5055291..5055926 (+) 636 WP_410539317.1 Holliday junction branch migration protein RuvA -
  QPK52_RS22800 ruvB 5056076..5057164 (+) 1089 WP_410539319.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QPK52_RS22805 yajC 5057328..5057765 (+) 438 WP_410539320.1 preprotein translocase subunit YajC -
  QPK52_RS22810 secD 5057881..5059707 (+) 1827 WP_410539321.1 protein translocase subunit SecD -
  QPK52_RS22815 secF 5059709..5060836 (+) 1128 WP_410539322.1 protein translocase subunit SecF -
  QPK52_RS22820 - 5060841..5061401 (+) 561 WP_093662611.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38574.98 Da        Isoelectric Point: 4.8999

>NTDB_id=771334 QPK52_RS22800 WP_410539319.1 5056076..5057164(+) (ruvB) [Streptomyces sp. KL2]
MSWEDHPGHTDGGAERLVGATADGEDTAVEAALRPKDLAEFVGQSKVREQLDLVLRAARARGGTADHVLLSGAPGLGKTT
LSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDIIVGKGPGATAIPL
ELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELEQVIHRSARLLDVEIDAEGAAEIAGRSRGTPRIANRLLRRV
RDYAQVRADGLITREIAGQALAVYEVDDRGLDRLDRAVLDALLRLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGL
LARTPRGRIATPAAWEHMGLTPPRQPPASAPGGPGQPGLFGS

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=771334 QPK52_RS22800 WP_410539319.1 5056076..5057164(+) (ruvB) [Streptomyces sp. KL2]
ATGAGCTGGGAGGACCACCCCGGCCACACCGACGGCGGCGCCGAACGCCTGGTCGGAGCCACGGCCGACGGCGAGGACAC
GGCGGTCGAGGCCGCGCTGCGCCCCAAGGACCTGGCGGAGTTCGTCGGGCAGTCCAAGGTGCGCGAACAGCTCGATCTGG
TGCTGCGCGCGGCCCGGGCCCGCGGCGGCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTGGGCAAGACCACC
CTGTCCATGATCATCGCGGCGGAGATGGGCGCCCCCATCCGCATCACCTCCGGGCCGGCCATCCAGCACGCCGGGGACCT
GGCCGCGATCCTCTCCTCCCTCACCGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCGCGGCCCGCCGAGG
AGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACATCATCGTCGGCAAGGGGCCCGGCGCCACCGCCATCCCCCTG
GAACTGCCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGCCTGCTGCCGCCGCCGCTGCGCGACCGCTTCGGCTT
CACCGCCCACATGGAGTTCTACGAGCCGGCCGAACTGGAGCAGGTCATCCACCGCTCCGCCCGGCTGCTGGACGTGGAGA
TAGACGCCGAGGGCGCCGCCGAGATCGCCGGGCGCTCCCGCGGCACCCCCCGCATCGCCAACCGGCTGCTGCGCCGGGTG
CGCGACTACGCCCAGGTCAGGGCCGACGGCCTGATCACCCGGGAGATCGCCGGACAGGCCCTGGCGGTCTACGAGGTGGA
CGACCGGGGCCTGGACCGCCTGGACCGGGCGGTGCTGGACGCCCTGCTCAGGCTGTTCGGCGGCGGCCCGGTCGGCCTGT
CCACGCTGGCCGTCGCGGTGGGCGAGGAGCGTGAGACGGTGGAGGAGGTCGCCGAGCCGTTCCTCGTCCGGGAGGGGTTG
CTGGCCCGCACCCCCCGGGGCCGGATCGCCACTCCCGCGGCATGGGAGCACATGGGGCTCACCCCGCCCCGGCAGCCGCC
GGCGTCCGCACCGGGAGGGCCGGGCCAACCCGGTCTCTTCGGATCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(269-338)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(33-191)

RuvB AAA lid domain (AAA_lid_4)

(194-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.455

91.16

0.506
  ruvB Synechocystis sp. PCC 6803

54.459

86.74

0.472
  ruvB Streptococcus pneumoniae TIGR4

52.16

89.503

0.467
  ruvB Streptococcus pneumoniae R6

52.16

89.503

0.467
  ruvB Streptococcus pneumoniae D39

52.16

89.503

0.467
  ruvB Helicobacter pylori 26695

49.693

90.055

0.448