Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QQS40_RS05820 Genome accession   NZ_CP127167
Coordinates   1139458..1140465 (+) Length   335 a.a.
NCBI ID   WP_289901346.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134458..1145465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS05790 - 1135082..1136350 (+) 1269 WP_329504274.1 NRAMP family divalent metal transporter -
  QQS40_RS05795 nudB 1136452..1136922 (+) 471 WP_329504276.1 dihydroneopterin triphosphate diphosphatase -
  QQS40_RS05800 - 1136959..1137699 (+) 741 WP_005697071.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QQS40_RS05805 - 1137717..1138151 (+) 435 WP_289901347.1 hypothetical protein -
  QQS40_RS05810 ruvC 1138202..1138774 (+) 573 WP_128787639.1 crossover junction endodeoxyribonuclease RuvC -
  QQS40_RS05815 ruvA 1138833..1139444 (+) 612 WP_128788032.1 Holliday junction branch migration protein RuvA Machinery gene
  QQS40_RS05820 ruvB 1139458..1140465 (+) 1008 WP_289901346.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QQS40_RS05825 - 1140521..1140832 (-) 312 WP_289901345.1 DUF5339 domain-containing protein -
  QQS40_RS05830 - 1141274..1142839 (+) 1566 WP_289901344.1 cytochrome ubiquinol oxidase subunit I -
  QQS40_RS05835 cydB 1142854..1143993 (+) 1140 WP_289901343.1 cytochrome d ubiquinol oxidase subunit II -
  QQS40_RS05840 ybgE 1144106..1144393 (+) 288 WP_128788031.1 cyd operon protein YbgE -
  QQS40_RS05845 ybgC 1144465..1144893 (+) 429 WP_225852609.1 tol-pal system-associated acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37119.45 Da        Isoelectric Point: 4.7235

>NTDB_id=771268 QQS40_RS05820 WP_289901346.1 1139458..1140465(+) (ruvB) [Haemophilus parainfluenzae strain HP01]
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVAHRSRGTPRIANRLLRRVRDFADVRNNG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGVDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=771268 QQS40_RS05820 WP_289901346.1 1139458..1140465(+) (ruvB) [Haemophilus parainfluenzae strain HP01]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCGGACTATGTGGGACAGCCACAAGTGCGAGAGCAAATGGATATTTTCATTCAGGCGGCAAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATCTTTGGTCCTCCAGGTTTAGGAAAAACGACGCTAGCTAATATTGTGGCGAATGAAATGGGG
GTGAATATTCGCACAACATCAGGTCCAGTTCTTGAAAAAGCTGGCGATTTAGCGGCAATGCTGACCAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGTTGGATATTATGATCGGTGAAGGCCCTGCTGCACGCTCAATTAAATTAGACTTGCCACCTTTCACATTAATTGGTGCA
ACAACTCGAGCGGGTTCTTTAACTTCGCCACTACGTGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTGGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCGC
ATCGTTCACGTGGTACGCCTCGCATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATAATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCAGTGATTGAACGTTTTGATGGTGGACCAGTTGGGGTAGATAACTTGGCAGCAGCAATAGGTGAAGAAC
GAGACACTATCGAGGATGTTTTAGAACCTTACTTGATTCAACAAGGATTTTTACAGCGAACTCCTCGAGGCCGGATTGCT
ACTTCGTTAACTTATCGACACTTCGGGCTTCAGAAGCCGTCAGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.614

98.209

0.615
  ruvB Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae R6

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae D39

58.589

97.313

0.57
  ruvB Synechocystis sp. PCC 6803

53.994

93.433

0.504
  ruvB Helicobacter pylori 26695

55.592

90.746

0.504