Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP73_RS23755 Genome accession   NZ_CP115271
Coordinates   5065251..5065886 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F018     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5060251..5070886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP73_RS23740 (PCP73_23745) - 5060957..5062201 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PCP73_RS23745 (PCP73_23750) - 5062289..5062822 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP73_RS23750 (PCP73_23755) comA 5062953..5065178 (+) 2226 WP_010793195.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP73_RS23755 (PCP73_23760) exbB 5065251..5065886 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP73_RS23760 (PCP73_23765) - 5065883..5066323 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PCP73_RS23765 (PCP73_23770) lpxK 5066323..5067321 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PCP73_RS23770 (PCP73_23775) - 5067359..5067544 (+) 186 WP_003091157.1 Trm112 family protein -
  PCP73_RS23775 (PCP73_23780) kdsB 5067544..5068308 (+) 765 WP_034074312.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP73_RS23780 (PCP73_23785) - 5068308..5068772 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  PCP73_RS23785 (PCP73_23790) murB 5068769..5069788 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=770948 PCP73_RS23755 WP_003091163.1 5065251..5065886(+) (exbB) [Pseudomonas aeruginosa strain F018]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=770948 PCP73_RS23755 WP_003091163.1 5065251..5065886(+) (exbB) [Pseudomonas aeruginosa strain F018]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81