Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQX48_RS24425 Genome accession   NZ_CP127123
Coordinates   5237322..5237819 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain Ned_5_Control     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5232322..5242819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX48_RS24405 (QQX48_24410) - 5232515..5233639 (+) 1125 WP_282307342.1 AAA family ATPase -
  QQX48_RS24410 - 5233734..5233922 (+) 189 WP_408588375.1 hypothetical protein -
  QQX48_RS24415 (QQX48_24415) - 5234002..5235384 (-) 1383 WP_236079437.1 UvrD-helicase domain-containing protein -
  QQX48_RS24420 (QQX48_24420) - 5235377..5237095 (-) 1719 WP_282307336.1 ATP-dependent endonuclease -
  QQX48_RS24425 (QQX48_24425) ssb 5237322..5237819 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QQX48_RS24430 (QQX48_24430) - 5237836..5239224 (-) 1389 WP_003103910.1 MFS transporter -
  QQX48_RS24435 (QQX48_24435) uvrA 5239438..5242275 (+) 2838 WP_180361144.1 excinuclease ABC subunit UvrA Machinery gene
  QQX48_RS24440 (QQX48_24440) bfr 5242347..5242811 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=770906 QQX48_RS24425 WP_003114685.1 5237322..5237819(-) (ssb) [Pseudomonas aeruginosa strain Ned_5_Control]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=770906 QQX48_RS24425 WP_003114685.1 5237322..5237819(-) (ssb) [Pseudomonas aeruginosa strain Ned_5_Control]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515