Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQX47_RS24480 Genome accession   NZ_CP127122
Coordinates   5248813..5249310 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain Ned_5_BIM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5243813..5254310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX47_RS24460 (QQX47_24460) - 5244006..5245130 (+) 1125 WP_282307342.1 AAA family ATPase -
  QQX47_RS24465 - 5245180..5245413 (+) 234 WP_350322865.1 aldo/keto reductase -
  QQX47_RS24470 (QQX47_24465) - 5245493..5246875 (-) 1383 WP_236079437.1 UvrD-helicase domain-containing protein -
  QQX47_RS24475 (QQX47_24470) - 5246868..5248586 (-) 1719 WP_282307336.1 ATP-dependent endonuclease -
  QQX47_RS24480 (QQX47_24475) ssb 5248813..5249310 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QQX47_RS24485 (QQX47_24480) - 5249327..5250715 (-) 1389 WP_003103910.1 MFS transporter -
  QQX47_RS24490 (QQX47_24485) uvrA 5250929..5253766 (+) 2838 WP_180361144.1 excinuclease ABC subunit UvrA Machinery gene
  QQX47_RS24495 (QQX47_24490) bfr 5253838..5254302 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=770805 QQX47_RS24480 WP_003114685.1 5248813..5249310(-) (ssb) [Pseudomonas aeruginosa strain Ned_5_BIM]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=770805 QQX47_RS24480 WP_003114685.1 5248813..5249310(-) (ssb) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515