Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | QQX47_RS07400 | Genome accession | NZ_CP127122 |
| Coordinates | 1566786..1567844 (+) | Length | 352 a.a. |
| NCBI ID | WP_003086123.1 | Uniprot ID | Q02IC9 |
| Organism | Pseudomonas aeruginosa strain Ned_5_BIM | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1561786..1572844
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQX47_RS07375 (QQX47_07375) | - | 1562046..1562516 (-) | 471 | WP_003086103.1 | Dps family protein | - |
| QQX47_RS07380 (QQX47_07380) | aspS | 1562956..1564731 (+) | 1776 | WP_003123218.1 | aspartate--tRNA ligase | - |
| QQX47_RS07385 (QQX47_07385) | - | 1564798..1565544 (+) | 747 | WP_003086107.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| QQX47_RS07390 (QQX47_07390) | ruvC | 1565629..1566153 (+) | 525 | WP_003112575.1 | crossover junction endodeoxyribonuclease RuvC | - |
| QQX47_RS07395 (QQX47_07395) | ruvA | 1566170..1566775 (+) | 606 | WP_003086122.1 | Holliday junction branch migration protein RuvA | - |
| QQX47_RS07400 (QQX47_07400) | ruvB | 1566786..1567844 (+) | 1059 | WP_003086123.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| QQX47_RS07405 (QQX47_07405) | ybgC | 1567897..1568343 (+) | 447 | WP_029611030.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| QQX47_RS07410 (QQX47_07410) | tolQ | 1568345..1569040 (+) | 696 | WP_003086125.1 | protein TolQ | - |
| QQX47_RS07415 (QQX47_07415) | tolR | 1569063..1569503 (+) | 441 | WP_003086126.1 | protein TolR | - |
| QQX47_RS07420 (QQX47_07420) | tolA | 1569506..1570549 (+) | 1044 | WP_003117096.1 | cell envelope integrity protein TolA | - |
| QQX47_RS07425 (QQX47_07425) | tolB | 1570546..1571844 (+) | 1299 | WP_003086128.1 | Tol-Pal system beta propeller repeat protein TolB | - |
| QQX47_RS07430 (QQX47_07430) | pal | 1571897..1572403 (+) | 507 | WP_003111417.1 | peptidoglycan-associated lipoprotein Pal | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 38932.67 Da Isoelectric Point: 5.1792
>NTDB_id=770765 QQX47_RS07400 WP_003086123.1 1566786..1567844(+) (ruvB) [Pseudomonas aeruginosa strain Ned_5_BIM]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN
Nucleotide
Download Length: 1059 bp
>NTDB_id=770765 QQX47_RS07400 WP_003086123.1 1566786..1567844(+) (ruvB) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCAGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACTAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGCTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACCCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
TGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGGCGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCAGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACTAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGCTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACCCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
TGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGGCGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.027 |
94.034 |
0.574 |
| ruvB | Streptococcus pneumoniae TIGR4 |
59.062 |
90.909 |
0.537 |
| ruvB | Streptococcus pneumoniae R6 |
58.75 |
90.909 |
0.534 |
| ruvB | Streptococcus pneumoniae D39 |
58.75 |
90.909 |
0.534 |
| ruvB | Synechocystis sp. PCC 6803 |
57.143 |
91.477 |
0.523 |
| ruvB | Helicobacter pylori 26695 |
55.449 |
88.636 |
0.491 |