Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMY50_RS24575 Genome accession   NZ_CP127034
Coordinates   4789028..4789564 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TW10690     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4784028..4794564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY50_RS24550 (QMY50_04809) soxR 4784317..4784781 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QMY50_RS24555 (QMY50_04810) soxS 4784867..4785190 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QMY50_RS24560 (QMY50_04811) pdeC 4785193..4786779 (-) 1587 WP_000019544.1 c-di-GMP phosphodiesterase PdeC -
  QMY50_RS24565 (QMY50_04812) yjcB 4787209..4787490 (+) 282 WP_001295689.1 YjcB family protein -
  QMY50_RS24570 (QMY50_04813) - 4787599..4788927 (+) 1329 WP_000547316.1 IS4-like element IS4 family transposase -
  QMY50_RS24575 (QMY50_04814) ssb 4789028..4789564 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QMY50_RS24580 (QMY50_04815) uvrA 4789818..4792640 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QMY50_RS24585 (QMY50_04816) yjbR 4792675..4793031 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QMY50_RS24590 (QMY50_04817) yjbQ 4793035..4793451 (-) 417 WP_112367309.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QMY50_RS24595 (QMY50_04818) aphA 4793562..4794275 (-) 714 WP_001389200.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=770300 QMY50_RS24575 WP_000168305.1 4789028..4789564(-) (ssb) [Escherichia coli strain TW10690]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=770300 QMY50_RS24575 WP_000168305.1 4789028..4789564(-) (ssb) [Escherichia coli strain TW10690]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489