Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7K58_RS20195 Genome accession   NZ_AP022188
Coordinates   4346195..4346770 (+) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media strain WP7-W18-ESBL-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4344746..4345693 4346195..4346770 flank 502


Gene organization within MGE regions


Location: 4344746..4346770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K58_RS20190 (WP7W18E02_39140) - 4344746..4345693 (+) 948 WP_043171239.1 IS30-like element ISAs2 family transposase -
  H7K58_RS20195 (WP7W18E02_39150) ssb 4346195..4346770 (+) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=77018 H7K58_RS20195 WP_005328769.1 4346195..4346770(+) (ssb) [Aeromonas media strain WP7-W18-ESBL-02]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=77018 H7K58_RS20195 WP_005328769.1 4346195..4346770(+) (ssb) [Aeromonas media strain WP7-W18-ESBL-02]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGTTGCAGACCCGCAAGTGGCAGGATCAGAGTGGTCAGGAGCGCTACACCACAGAGGTGCTGGTCGACAGTTT
CACCGGCGTGATGCAAATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAGGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGATGA
CGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45

Multiple sequence alignment