Detailed information NTG0076997

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H7K58_RS02525
• Genome accession: NZ_AP022188
• Coordinates: 531280..532152 (-)
• Length: 290 a.a.
• NCBI ID: WP_182787459.1
• Uniprot ID: -
• Organism: Aeromonas media strain WP7-W18-ESBL-02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 526280..537152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7K58_RS02500 (WP7W18E02_04840)	secA	526327..529047 (+)	2721	WP_042649031.1	preprotein translocase subunit SecA	-
H7K58_RS02505 (WP7W18E02_04850)	mutT	529203..529607 (+)	405	WP_005332118.1	8-oxo-dGTP diphosphatase MutT	-
H7K58_RS02510 (WP7W18E02_04860)	yacG	529683..529877 (-)	195	WP_042649030.1	DNA gyrase inhibitor YacG	-
H7K58_RS02515 (WP7W18E02_04870)	zapD	529887..530609 (-)	723	WP_182787455.1	cell division protein ZapD	-
H7K58_RS02520 (WP7W18E02_04880)	coaE	530647..531261 (-)	615	WP_182787457.1	dephospho-CoA kinase	-
H7K58_RS02525 (WP7W18E02_04890)	pilD	531280..532152 (-)	873	WP_182787459.1	prepilin peptidase	Machinery gene
H7K58_RS02530 (WP7W18E02_04900)	pilC	532233..533474 (-)	1242	WP_182787461.1	type II secretion system F family protein	Machinery gene
H7K58_RS02535 (WP7W18E02_04910)	pilB	533604..535310 (-)	1707	WP_182787463.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
H7K58_RS02540	tapA	535314..535751 (-)	438	WP_182788811.1	type IVa pilus major pilin TapA	-
H7K58_RS02545 (WP7W18E02_04920)	nadC	536076..536939 (-)	864	WP_182787465.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32024.27 Da
• Isoelectric Point: 7.0918

>NTDB_id=76997 H7K58_RS02525 WP_182787459.1 531280..532152(-) (pilD) [Aeromonas media strain WP7-W18-ESBL-02]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGVGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=76997 H7K58_RS02525 WP_182787459.1 531280..532152(-) (pilD) [Aeromonas media strain WP7-W18-ESBL-02]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGGTTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTGCCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGTTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTTGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATTTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGAAAGGAGGGGATGGGTCATG
GCGACTTCAAGCTGCTGGCTGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG
GTCGGCGCCATCATCGGGGTCGGGCTTATCCTGCTGCGTAACCATCATCAGGGCAAACCCATCCCCTTTGGTCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.754	98.276	0.607
pilD	Vibrio campbellii strain DS40M4	56.401	99.655	0.562
pilD	Acinetobacter nosocomialis M2	51.799	95.862	0.497
pilD	Acinetobacter baumannii D1279779	51.439	95.862	0.493
pilD	Neisseria gonorrhoeae MS11	49.615	89.655	0.445