Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQC31_RS12760 Genome accession   NZ_CP127004
Coordinates   2541929..2542465 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain YZ3-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2536929..2547465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQC31_RS12740 (QQC31_12705) soxR 2538657..2539121 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QQC31_RS12745 (QQC31_12710) soxS 2539207..2539530 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QQC31_RS12750 (QQC31_12715) pdeC 2539533..2541119 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  QQC31_RS12755 (QQC31_12720) yjcB 2541549..2541830 (+) 282 WP_001295689.1 YjcB family protein -
  QQC31_RS12760 (QQC31_12725) ssb 2541929..2542465 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QQC31_RS12765 (QQC31_12730) uvrA 2542719..2545541 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QQC31_RS12770 (QQC31_12735) yjbR 2545576..2545932 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  QQC31_RS12775 (QQC31_12740) yjbQ 2545936..2546352 (-) 417 WP_001402774.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QQC31_RS12780 (QQC31_12745) aphA 2546463..2547176 (-) 714 WP_001402773.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=769824 QQC31_RS12760 WP_000168305.1 2541929..2542465(-) (ssb) [Escherichia coli strain YZ3-11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=769824 QQC31_RS12760 WP_000168305.1 2541929..2542465(-) (ssb) [Escherichia coli strain YZ3-11]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489