Detailed information NTG0769726

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QP019_RS05700
• Genome accession: NZ_CP126978
• Coordinates: 1131380..1132378 (+)
• Length: 332 a.a.
• NCBI ID: WP_021461821.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain YJ922
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1126380..1137378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP019_RS05675 (QP019_05675)	gorA	1126734..1128083 (-)	1350	WP_285096966.1	glutathione-disulfide reductase	-
QP019_RS05680 (QP019_05680)	-	1128190..1129032 (-)	843	WP_039092395.1	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	-
QP019_RS05685 (QP019_05685)	-	1129043..1129585 (-)	543	WP_285096967.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
QP019_RS05690 (QP019_05690)	-	1129643..1130530 (-)	888	WP_021461819.1	DMT family transporter	-
QP019_RS05695 (QP019_05695)	ruvA	1130750..1131358 (+)	609	WP_039083346.1	Holliday junction branch migration protein RuvA	Machinery gene
QP019_RS05700 (QP019_05700)	ruvB	1131380..1132378 (+)	999	WP_021461821.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QP019_RS05705 (QP019_05705)	hutZ	1132742..1133260 (-)	519	WP_065233357.1	heme utilization protein HutZ	-
QP019_RS05710 (QP019_05710)	hutX	1133254..1133763 (-)	510	WP_285096968.1	heme utilization cystosolic carrier protein HutX	-
QP019_RS05715 (QP019_05715)	-	1133785..1135917 (-)	2133	WP_285096969.1	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37141.75 Da
• Isoelectric Point: 4.9551

>NTDB_id=769726 QP019_RS05700 WP_021461821.1 1131380..1132378(+) (ruvB) [Gallibacterium anatis strain YJ922]
MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIVVRSANCLNLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNGG
FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIA
TLHTYRHFGVSK

Nucleotide

• Length: 999 bp

>NTDB_id=769726 QP019_RS05700 WP_021461821.1 1131380..1132378(+) (ruvB) [Gallibacterium anatis strain YJ922]
ATGATTGAAGCAGACCGTATTATCAGCCCTACGGCAAAAGAGGAAGAAGAGTATATCGACCGCGCAATCCGTCCAAAATT
GTTGCAGGATTATGTTGGACAACCGCACGTTCGGGAACAGATGGATATTTTTATCAAAGCGGCGAAAATGCGTAATGATG
CACTTGATCATCTGTTGATTTTTGGTCCTCCCGGTTTGGGCAAAACCACATTAGCCAATATTGTCGCCAATGAAATGGGG
GTGAATATTCGCACCACTTCCGGTCCGGTGTTGGAAAAAGCAGGCGATTTAGCAGCAATGTTGACCAATTTAGAGCCTTA
CGACGTGCTGTTTATTGATGAAATTCATCGTTTATCACCGGCAATCGAGGAAGTGTTGTATCCGGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAGGGGCCGGCAGCACGGTCGATTAAATTGGATTTGCCGCCGTTTACGTTGGTTGGCGCA
ACGACACGTGCCGGATCATTGACTTCGCCATTGCGAGATCGTTTTGGCATTGTGCAACGCTTGGAATTTTATTCGATTGA
AGATTTAACCTCCATTGTGGTGCGTAGCGCAAATTGCCTCAATCTTCAGATTGATGAGCAAGCGGCACACGAAATTGCAC
GCCGCTCACGCGGCACACCACGAATTGTAAATCGATTATTACGTCGTGTTCGCGATTATGCCGATGTCAAAAATGGCGGC
TTTATTTCGGTAGAGATTGCGAAATTGGCATTAACGATGTTGGATATTGATTCAGAAGGCTTTGATTTTATGGATCGTAA
ATTGTTAATGGCGATTATTGAGCGTTTTGACGGCGGCCCGGTCGGTTTGGATAATTTAGCTGCGGCGATCGGTGAAGAGA
AAGAAACAATAGAAGATGTGTTGGAGCCTTATTTAATCCAGCAAGGTTTCTTACAACGTACACCGCGAGGAAGAATTGCC
ACACTGCATACTTATCGACATTTTGGAGTAAGTAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.654	97.59	0.611
ruvB	Streptococcus pneumoniae TIGR4	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae R6	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae D39	58.333	97.59	0.569
ruvB	Synechocystis sp. PCC 6803	51.964	99.699	0.518
ruvB	Helicobacter pylori 26695	53.271	96.687	0.515