Detailed information NTG0769672

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QP020_RS05140
• Genome accession: NZ_CP126977
• Coordinates: 1073878..1074879 (-)
• Length: 333 a.a.
• NCBI ID: WP_039154198.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain DFSO2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1068878..1079879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP020_RS05115 (QP020_05115)	cdd	1069109..1070026 (+)	918	WP_285099189.1	cytidine deaminase	-
QP020_RS05120 (QP020_05120)	fbp	1070160..1071164 (+)	1005	WP_039089781.1	class 1 fructose-bisphosphatase	-
QP020_RS05125 (QP020_05125)	-	1071413..1071850 (+)	438	WP_094873734.1	GNAT family N-acetyltransferase	-
QP020_RS05130 (QP020_05130)	-	1072167..1072910 (+)	744	WP_039154203.1	2OG-Fe dioxygenase family protein	-
QP020_RS05135 (QP020_05135)	-	1072923..1073813 (+)	891	WP_039154200.1	lysine exporter LysO family protein	-
QP020_RS05140 (QP020_05140)	ruvB	1073878..1074879 (-)	1002	WP_039154198.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QP020_RS05145 (QP020_05145)	ruvA	1074901..1075509 (-)	609	WP_039083346.1	Holliday junction branch migration protein RuvA	Machinery gene
QP020_RS05150 (QP020_05150)	-	1075729..1076616 (+)	888	WP_021461819.1	DMT family transporter	-
QP020_RS05155 (QP020_05155)	-	1076674..1077216 (+)	543	WP_285096967.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
QP020_RS05160 (QP020_05160)	-	1077227..1078069 (+)	843	WP_042907353.1	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	-
QP020_RS05165 (QP020_05165)	gorA	1078176..1079525 (+)	1350	WP_013747040.1	glutathione-disulfide reductase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37283.86 Da
• Isoelectric Point: 4.8706

>NTDB_id=769672 QP020_RS05140 WP_039154198.1 1073878..1074879(-) (ruvB) [Gallibacterium anatis strain DFSO2]
MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIVVRSANCLNLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNGG
FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIA
TLHTYQHFGVTQR

Nucleotide

• Length: 1002 bp

>NTDB_id=769672 QP020_RS05140 WP_039154198.1 1073878..1074879(-) (ruvB) [Gallibacterium anatis strain DFSO2]
ATGATTGAAGCAGACCGTATTATCAGCCCTACGGCAAAAGAGGAAGAAGAGTATATCGACCGCGCAATCCGTCCAAAATT
GTTGCAGGATTATGTTGGACAACCGCACGTTCGGGAACAGATGGATATTTTTATCAAAGCGGCGAAAATGCGTAATGATG
CACTTGATCATCTGTTGATTTTTGGTCCTCCCGGTTTGGGCAAAACCACATTAGCCAATATTGTCGCCAATGAAATGGGG
GTGAATATTCGCACCACTTCCGGTCCGGTGTTGGAAAAAGCAGGCGATTTAGCAGCAATGTTGACCAATTTAGAGCCTTA
CGACGTGCTGTTTATTGATGAGATTCATCGTTTATCACCGGCAATCGAGGAGGTGTTGTATCCGGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAGGGGCCGGCAGCACGGTCGATTAAATTGGATTTGCCGCCGTTTACGTTGGTTGGCGCA
ACGACGCGTGCCGGATCATTGACTTCGCCATTGCGAGATCGTTTCGGCATTGTGCAACGCTTGGAATTTTATTCGATTGA
AGATTTAACCTCCATTGTGGTGCGTAGCGCAAATTGCCTCAATCTTCAGATTGATGAGCAAGCGGCACACGAAATTGCAC
GCCGTTCACGCGGCACACCACGAATTGTAAATCGATTATTGCGTCGTGTTCGCGATTATGCCGATGTCAAAAATGGCGGC
TTTATTTCGGTAGAGATTGCGAAATTGGCATTAACGATGTTGGATATTGATTCAGAAGGCTTTGATTTTATGGATCGTAA
ATTGTTAATGGCGATTATTGAGCGTTTTGACGGTGGTCCAGTTGGTTTAGATAATTTAGCTGCAGCGATTGGCGAAGAGA
AAGAAACAATAGAAGATGTTTTGGAACCTTATTTAATTCAACAAGGCTTCTTACAACGTACTCCACGAGGAAGAATTGCC
ACACTGCATACGTATCAGCATTTTGGGGTAACGCAACGATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.654	97.297	0.61
ruvB	Streptococcus pneumoniae TIGR4	58.333	97.297	0.568
ruvB	Streptococcus pneumoniae R6	58.333	97.297	0.568
ruvB	Streptococcus pneumoniae D39	58.333	97.297	0.568
ruvB	Synechocystis sp. PCC 6803	52.266	99.399	0.52
ruvB	Helicobacter pylori 26695	53.106	96.697	0.514