Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QP018_RS08335 Genome accession   NZ_CP126975
Coordinates   1747012..1748220 (-) Length   402 a.a.
NCBI ID   WP_013746607.1    Uniprot ID   A0AAX3XD00
Organism   Gallibacterium anatis strain BJF12     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1742012..1753220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS08300 (QP018_08300) fdxH 1742605..1743516 (+) 912 WP_039145456.1 formate dehydrogenase subunit beta -
  QP018_RS08305 (QP018_08305) - 1743519..1744178 (+) 660 WP_013746615.1 formate dehydrogenase subunit gamma -
  QP018_RS08310 (QP018_08310) fdhE 1744180..1745103 (+) 924 WP_039094142.1 formate dehydrogenase accessory protein FdhE -
  QP018_RS08315 (QP018_08315) - 1745169..1745441 (-) 273 WP_013746612.1 GNAT family N-acetyltransferase -
  QP018_RS08320 (QP018_08320) yacG 1745528..1745746 (-) 219 WP_013746611.1 DNA gyrase inhibitor YacG -
  QP018_RS08325 (QP018_08325) coaE 1745736..1746368 (-) 633 WP_285092761.1 dephospho-CoA kinase -
  QP018_RS08330 (QP018_08330) - 1746383..1747015 (-) 633 WP_285092762.1 prepilin peptidase -
  QP018_RS08335 (QP018_08335) pilC 1747012..1748220 (-) 1209 WP_013746607.1 type II secretion system F family protein Machinery gene
  QP018_RS08340 (QP018_08340) pilB 1748236..1749645 (-) 1410 WP_285092763.1 GspE/PulE family protein Machinery gene
  QP018_RS08345 (QP018_08345) pilA 1749662..1750123 (-) 462 WP_039148357.1 prepilin peptidase-dependent pilin Machinery gene
  QP018_RS08350 (QP018_08350) ampD 1750228..1750782 (+) 555 WP_285092764.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QP018_RS08355 (QP018_08355) - 1750869..1751204 (+) 336 WP_013746603.1 hypothetical protein -
  QP018_RS08360 (QP018_08360) - 1751313..1752707 (+) 1395 WP_285092765.1 chloride channel protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 45758.98 Da        Isoelectric Point: 9.7258

>NTDB_id=769624 QP018_RS08335 WP_013746607.1 1747012..1748220(-) (pilC) [Gallibacterium anatis strain BJF12]
MPEYRWKGKDQFGNSVKGVLIADDREQARQRLFAQGIFLSSLNKNWQFFSTLTLEKQAEFLLQFALLLQAEIPLKPALQM
LQESCDSTSLYQLIGRCLTALNSGFSLSTALKNEKQFLSEQEWQLLYSGEISAQLAKVMKQLADNKLRQLKLRQQMKKIM
FYPLMMLSVSMLLTVLLLLFIVPKFADLYDQQQHALPLITQVLLQSSQFLQNYLWQLLAVFVVGIVALRRCYLMFPSLRR
QLLKLACLVPSIQRLYLQLQQIQFYTILSSMLNSGITLQQSLATFVPQSGYQRSRAATESILAIEAQQCLQSLQAGQRFS
SGLSSRFIPYQAKQMIIIGENSGNLVQMLHYLAEQSQQNLSNQVEVFSKLLEPILMLIIGSIIGVVIAGMYLPIFNMGNV
VL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=769624 QP018_RS08335 WP_013746607.1 1747012..1748220(-) (pilC) [Gallibacterium anatis strain BJF12]
ATGCCGGAATATCGTTGGAAAGGAAAGGATCAATTTGGTAATAGCGTCAAAGGAGTATTGATTGCGGATGATCGGGAACA
GGCACGTCAACGCCTTTTTGCACAAGGGATCTTTTTATCCTCATTAAATAAAAATTGGCAATTTTTCTCCACACTAACAT
TGGAGAAACAAGCTGAATTTTTATTGCAGTTCGCATTATTGTTGCAGGCAGAGATACCGTTGAAACCGGCGTTGCAGATG
TTACAGGAAAGTTGTGATTCAACCTCTTTATACCAACTGATAGGGCGGTGCTTAACCGCATTGAACAGTGGTTTTTCATT
ATCAACGGCATTAAAAAATGAAAAGCAATTTTTATCGGAACAGGAGTGGCAATTGTTATACAGCGGTGAAATCAGTGCGC
AATTGGCAAAGGTAATGAAACAATTAGCGGATAATAAATTGCGACAACTAAAGTTACGGCAGCAGATGAAAAAAATTATG
TTTTATCCGTTAATGATGTTGTCGGTGTCAATGTTATTAACGGTGTTATTGCTGCTTTTTATTGTGCCTAAATTTGCTGA
TTTATATGATCAACAACAGCACGCCTTACCGTTGATTACACAAGTTTTATTACAGAGCTCGCAATTTTTGCAAAATTATC
TGTGGCAATTATTGGCAGTATTTGTCGTAGGCATTGTGGCGCTACGGCGGTGTTATCTGATGTTTCCTTCATTACGCCGG
CAATTATTGAAATTGGCTTGTTTAGTGCCATCAATTCAGCGGCTTTATTTGCAGTTACAACAAATTCAGTTTTATACCAT
TCTCTCTTCAATGTTAAATTCAGGCATAACCTTGCAACAGAGTTTAGCCACCTTTGTGCCTCAATCCGGTTATCAACGAA
GCCGAGCAGCAACAGAATCCATTTTAGCGATTGAAGCACAGCAATGTTTACAGAGCTTGCAGGCAGGGCAACGATTTTCT
TCAGGGTTGAGCAGTCGCTTTATTCCCTATCAGGCAAAACAGATGATTATTATCGGTGAAAATAGCGGCAATTTGGTGCA
GATGTTGCACTATTTAGCGGAACAGAGCCAACAAAATTTATCTAATCAAGTGGAGGTGTTTTCTAAATTATTGGAGCCGA
TATTAATGTTAATAATCGGCTCAATTATTGGTGTGGTTATTGCCGGTATGTATCTGCCGATTTTTAATATGGGCAATGTG
GTTTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-393)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX3XD00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

36.118

100

0.366
  pilC Haemophilus influenzae 86-028NP

35.872

100

0.363