Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQA22_RS23230 Genome accession   NZ_CP126952
Coordinates   4749897..4750433 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O78:H4 strain APEC E12049     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4744897..4755433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA22_RS23210 (QQA22_23210) soxR 4746626..4747090 (-) 465 WP_039004760.1 redox-sensitive transcriptional activator SoxR -
  QQA22_RS23215 (QQA22_23215) soxS 4747176..4747499 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QQA22_RS23220 (QQA22_23220) pdeC 4747502..4749088 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  QQA22_RS23225 (QQA22_23225) yjcB 4749517..4749798 (+) 282 WP_001295689.1 YjcB family protein -
  QQA22_RS23230 (QQA22_23230) ssb 4749897..4750433 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QQA22_RS23235 (QQA22_23235) uvrA 4750688..4753510 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QQA22_RS23240 (QQA22_23240) yjbR 4753545..4753901 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  QQA22_RS23245 (QQA22_23245) yjbQ 4753905..4754321 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QQA22_RS23250 (QQA22_23250) aphA 4754432..4755145 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=769386 QQA22_RS23230 WP_000168305.1 4749897..4750433(-) (ssb) [Escherichia coli O78:H4 strain APEC E12049]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=769386 QQA22_RS23230 WP_000168305.1 4749897..4750433(-) (ssb) [Escherichia coli O78:H4 strain APEC E12049]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489