Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PCP53_RS04645 Genome accession   NZ_CP115211
Coordinates   1010704..1012041 (-) Length   445 a.a.
NCBI ID   WP_116843176.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F064     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005704..1017041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP53_RS04615 (PCP53_04620) - 1006353..1006958 (-) 606 WP_003116263.1 pilus assembly PilX family protein -
  PCP53_RS04620 (PCP53_04625) - 1006955..1007770 (-) 816 WP_016562347.1 PilW family protein -
  PCP53_RS04625 (PCP53_04630) pilV 1007779..1008303 (-) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PCP53_RS04630 (PCP53_04635) - 1008313..1008801 (-) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PCP53_RS04635 (PCP53_04640) - 1008924..1009424 (-) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  PCP53_RS04640 (PCP53_04645) thiO 1009564..1010658 (+) 1095 WP_033944813.1 glycine oxidase ThiO -
  PCP53_RS04645 (PCP53_04650) pilR 1010704..1012041 (-) 1338 WP_116843176.1 two-component system response regulator PilR Regulator
  PCP53_RS04650 (PCP53_04655) pilS 1012056..1013648 (-) 1593 WP_003110428.1 two-component system sensor histidine kinase PilS Regulator
  PCP53_RS04655 (PCP53_04660) - 1013638..1013883 (-) 246 WP_003102591.1 PP0621 family protein -
  PCP53_RS04660 (PCP53_04665) - 1014040..1015065 (-) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  PCP53_RS04665 (PCP53_04670) rluD 1015211..1016173 (+) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCP53_RS04670 (PCP53_04675) pgeF 1016170..1016898 (+) 729 WP_043085210.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49748.03 Da        Isoelectric Point: 6.1235

>NTDB_id=769354 PCP53_RS04645 WP_116843176.1 1010704..1012041(-) (pilR) [Pseudomonas aeruginosa strain F064]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDRRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=769354 PCP53_RS04645 WP_116843176.1 1010704..1012041(-) (pilR) [Pseudomonas aeruginosa strain F064]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACAGGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGCCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCAGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.551

100

0.996
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384