Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP53_RS04625 Genome accession   NZ_CP115211
Coordinates   1007779..1008303 (-) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain F064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1002779..1013303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP53_RS04610 (PCP53_04615) - 1002863..1006339 (-) 3477 WP_023103514.1 pilus assembly protein -
  PCP53_RS04615 (PCP53_04620) - 1006353..1006958 (-) 606 WP_003116263.1 pilus assembly PilX family protein -
  PCP53_RS04620 (PCP53_04625) - 1006955..1007770 (-) 816 WP_016562347.1 PilW family protein -
  PCP53_RS04625 (PCP53_04630) pilV 1007779..1008303 (-) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PCP53_RS04630 (PCP53_04635) - 1008313..1008801 (-) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PCP53_RS04635 (PCP53_04640) - 1008924..1009424 (-) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  PCP53_RS04640 (PCP53_04645) thiO 1009564..1010658 (+) 1095 WP_033944813.1 glycine oxidase ThiO -
  PCP53_RS04645 (PCP53_04650) pilR 1010704..1012041 (-) 1338 WP_116843176.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=769353 PCP53_RS04625 WP_003116261.1 1007779..1008303(-) (pilV) [Pseudomonas aeruginosa strain F064]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=769353 PCP53_RS04625 WP_003116261.1 1007779..1008303(-) (pilV) [Pseudomonas aeruginosa strain F064]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598