Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQA23_RS22520 Genome accession   NZ_CP126948
Coordinates   4602327..4602863 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O78:H4 strain APEC E14033     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4597327..4607863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA23_RS22500 (QQA23_22470) soxR 4599056..4599520 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  QQA23_RS22505 (QQA23_22475) soxS 4599606..4599929 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QQA23_RS22510 (QQA23_22480) pdeC 4599932..4601518 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  QQA23_RS22515 (QQA23_22485) yjcB 4601947..4602228 (+) 282 WP_001295689.1 YjcB family protein -
  QQA23_RS22520 (QQA23_22490) ssb 4602327..4602863 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QQA23_RS22525 (QQA23_22495) uvrA 4603118..4605940 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QQA23_RS22530 (QQA23_22500) yjbR 4605975..4606331 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  QQA23_RS22535 (QQA23_22505) yjbQ 4606335..4606751 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QQA23_RS22540 (QQA23_22510) aphA 4606862..4607575 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=769302 QQA23_RS22520 WP_000168305.1 4602327..4602863(-) (ssb) [Escherichia coli O78:H4 strain APEC E14033]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=769302 QQA23_RS22520 WP_000168305.1 4602327..4602863(-) (ssb) [Escherichia coli O78:H4 strain APEC E14033]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489