Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQA28_RS23320 Genome accession   NZ_CP126944
Coordinates   4708700..4709236 (-) Length   178 a.a.
NCBI ID   WP_080282682.1    Uniprot ID   -
Organism   Escherichia coli O1:K1:H7 strain APEC E16002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4703700..4714236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA28_RS23300 (QQA28_23300) soxR 4705429..4705893 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  QQA28_RS23305 (QQA28_23305) soxS 4705979..4706302 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QQA28_RS23310 (QQA28_23310) pdeC 4706305..4707891 (-) 1587 WP_001314348.1 c-di-GMP phosphodiesterase PdeC -
  QQA28_RS23315 (QQA28_23315) yjcB 4708320..4708601 (+) 282 WP_001296643.1 YjcB family protein -
  QQA28_RS23320 (QQA28_23320) ssb 4708700..4709236 (-) 537 WP_080282682.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QQA28_RS23325 (QQA28_23325) uvrA 4709490..4712312 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  QQA28_RS23330 (QQA28_23330) yjbR 4712347..4712703 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QQA28_RS23335 (QQA28_23335) yjbQ 4712707..4713123 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QQA28_RS23340 (QQA28_23340) aphA 4713234..4713947 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19005.02 Da        Isoelectric Point: 5.2358

>NTDB_id=769135 QQA28_RS23320 WP_080282682.1 4708700..4709236(-) (ssb) [Escherichia coli O1:K1:H7 strain APEC E16002]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWSQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=769135 QQA28_RS23320 WP_080282682.1 4708700..4709236(-) (ssb) [Escherichia coli O1:K1:H7 strain APEC E16002]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGAGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489