Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QQA29_RS11150 Genome accession   NZ_CP126942
Coordinates   2275438..2276448 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli O1:K1:H7 strain APEC E18006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2270438..2281448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA29_RS11120 (QQA29_11120) nudB 2272161..2272613 (+) 453 WP_077393227.1 dihydroneopterin triphosphate diphosphatase -
  QQA29_RS11125 (QQA29_11125) yebC 2272642..2273382 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QQA29_RS11130 (QQA29_11130) ruvC 2273417..2273938 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  QQA29_RS11135 (QQA29_11135) yebB 2273940..2274542 (-) 603 WP_001024939.1 YebB family permuted papain-like enzyme -
  QQA29_RS11140 (QQA29_11140) yobI 2274614..2274679 (+) 66 WP_072123646.1 stress response small protein YobI -
  QQA29_RS11145 (QQA29_11145) ruvA 2274818..2275429 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  QQA29_RS11150 (QQA29_11150) ruvB 2275438..2276448 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QQA29_RS11155 (QQA29_11155) znuB 2276665..2277450 (-) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  QQA29_RS11160 (QQA29_11160) znuC 2277447..2278202 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  QQA29_RS11165 (QQA29_11165) znuA 2278281..2279213 (+) 933 WP_001347089.1 zinc ABC transporter substrate-binding protein ZnuA -
  QQA29_RS11170 (QQA29_11170) mepM 2279229..2280551 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=769020 QQA29_RS11150 WP_000568519.1 2275438..2276448(+) (ruvB) [Escherichia coli O1:K1:H7 strain APEC E18006]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=769020 QQA29_RS11150 WP_000568519.1 2275438..2276448(+) (ruvB) [Escherichia coli O1:K1:H7 strain APEC E18006]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494