Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PCQ86_RS19345 Genome accession   NZ_CP115182
Coordinates   4017237..4017770 (+) Length   177 a.a.
NCBI ID   WP_270174528.1    Uniprot ID   -
Organism   Diaphorobacter sp. ED-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4012237..4022770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCQ86_RS19335 uvrA 4012541..4015630 (-) 3090 WP_270174527.1 excinuclease ABC subunit UvrA -
  PCQ86_RS19340 - 4015921..4017102 (+) 1182 WP_011807146.1 MFS transporter -
  PCQ86_RS19345 ssb 4017237..4017770 (+) 534 WP_270174528.1 single-stranded DNA-binding protein Machinery gene
  PCQ86_RS19350 - 4017887..4018456 (+) 570 WP_270174529.1 hypothetical protein -
  PCQ86_RS19355 - 4018383..4019024 (-) 642 WP_333489924.1 AMP-binding protein -
  PCQ86_RS19360 - 4019091..4020707 (-) 1617 WP_270174530.1 4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein -
  PCQ86_RS19365 - 4020780..4021469 (+) 690 WP_270174531.1 TetR/AcrR family transcriptional regulator -
  PCQ86_RS19370 - 4021466..4022017 (+) 552 WP_270174532.1 isochorismatase family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19100.09 Da        Isoelectric Point: 5.9554

>NTDB_id=768691 PCQ86_RS19345 WP_270174528.1 4017237..4017770(+) (ssb) [Diaphorobacter sp. ED-3]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGYDDSGYGDNGGGGGGGYEAPRRAAPAPRPAPPAARPAPAPVAQ
PPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=768691 PCQ86_RS19345 WP_270174528.1 4017237..4017770(+) (ssb) [Diaphorobacter sp. ED-3]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTGCGCATCGCCACGACGGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAATGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTACGTGGAAGGC
AGCCTGCGCACGCGCAAATGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCTATGACGACAGCGGCTACGGCGACAACGGCGGCGGCGGTGGTGGCGGCT
ACGAGGCCCCGCGCCGCGCCGCACCCGCGCCGCGCCCCGCCCCCCCCGCGGCCCGCCCCGCCCCCGCGCCCGTGGCACAG
CCGCCGCGCGCCGCATCGGGCTTTGACGACATGGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.191

100

0.565
  ssb Vibrio cholerae strain A1552

51.366

100

0.531
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.458
  ssb Neisseria meningitidis MC58

43.82

100

0.441