Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ORQ91_RS00100 Genome accession   NZ_CP115172
Coordinates   18264..18806 (+) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain BS-10L     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 13264..23806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS00075 (ORQ91_00013) - 14267..14677 (-) 411 WP_024424061.1 hypothetical protein -
  ORQ91_RS00080 (ORQ91_00014) - 14693..16012 (-) 1320 WP_270126443.1 hydrolase -
  ORQ91_RS00085 (ORQ91_00015) - 16308..16514 (+) 207 WP_025093670.1 DUF951 domain-containing protein -
  ORQ91_RS00090 (ORQ91_00016) ychF 16731..17831 (+) 1101 WP_024424059.1 redox-regulated ATPase YchF -
  ORQ91_RS00095 (ORQ91_00017) rpsF 17940..18227 (+) 288 WP_024424058.1 30S ribosomal protein S6 -
  ORQ91_RS00100 (ORQ91_00018) ssbA 18264..18806 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  ORQ91_RS00105 (ORQ91_00019) rpsR 18847..19086 (+) 240 WP_008359105.1 30S ribosomal protein S18 -
  ORQ91_RS00110 (ORQ91_00020) - 19290..20255 (+) 966 WP_122632134.1 ABC transporter ATP-binding protein -
  ORQ91_RS00115 (ORQ91_00021) opuFB 20248..21765 (+) 1518 WP_206534156.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  ORQ91_RS00120 (ORQ91_00022) - 21977..22927 (+) 951 WP_080780815.1 ring-cleaving dioxygenase -
  ORQ91_RS00125 (ORQ91_00023) - 22924..23532 (+) 609 WP_044333137.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=768524 ORQ91_RS00100 WP_007497456.1 18264..18806(+) (ssbA) [Bacillus safensis strain BS-10L]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=768524 ORQ91_RS00100 WP_007497456.1 18264..18806(+) (ssbA) [Bacillus safensis strain BS-10L]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTTAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361